Technological advances in cancer immunity: from immunogenomics to single-cell analysis and artificial intelligence

Y Xu, GH Su, D Ma, Y Xiao, ZM Shao… - Signal Transduction and …, 2021 - nature.com
Immunotherapies play critical roles in cancer treatment. However, given that only a few
patients respond to immune checkpoint blockades and other immunotherapeutic strategies …

Immune cell profiling in atherosclerosis: role in research and precision medicine

DM Fernandez, C Giannarelli - Nature Reviews Cardiology, 2022 - nature.com
Inflammation is intimately involved at all stages of atherosclerosis and remains a substantial
residual cardiovascular risk factor in optimally treated patients. The proof of concept that …

Single-cell analysis of human adipose tissue identifies depot-and disease-specific cell types

J Vijay, MF Gauthier, RL Biswell, DA Louiselle… - Nature …, 2020 - nature.com
The complex relationship between metabolic disease risk and body fat distribution in
humans involves cellular characteristics that are specific to body fat compartments. Here we …

Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis

CH Chou, V Jain, J Gibson, DE Attarian… - Scientific Reports, 2020 - nature.com
We elucidated the molecular cross-talk between cartilage and synovium in osteoarthritis, the
most widespread arthritis in the world, using the powerful tool of single-cell RNA …

Single-cell transcriptomics: current methods and challenges in data acquisition and analysis

A Adil, V Kumar, AT Jan, M Asger - Frontiers in Neuroscience, 2021 - frontiersin.org
Rapid cost drops and advancements in next-generation sequencing have made profiling of
cells at individual level a conventional practice in scientific laboratories worldwide. Single …

Best practices on the differential expression analysis of multi-species RNA-seq

M Chung, VM Bruno, DA Rasko, CA Cuomo, JF Muñoz… - Genome biology, 2021 - Springer
Advances in transcriptome sequencing allow for simultaneous interrogation of differentially
expressed genes from multiple species originating from a single RNA sample, termed dual …

Landscape and dynamics of single tumor and immune cells in early and advanced‐stage lung adenocarcinoma

Z Chen, Y Huang, Z Hu, M Zhao, M Li… - Clinical and …, 2021 - Wiley Online Library
Background Lung adenocarcinoma (LUAD) patients with different American Joint Committee
on Cancer stages have different overall 5‐year survival rates. The tumor microenvironment …

A novel prognostic model based on single-cell RNA sequencing data for hepatocellular carcinoma

J Lu, Y Chen, X Zhang, J Guo, K Xu, L Li - Cancer cell international, 2022 - Springer
Background The tumour heterogeneous make-up of immune cell infiltrates is a key factor for
the therapy response and prognosis of hepatocellular carcinoma (HCC). However, it is still a …

Systems genetics approaches for understanding complex traits with relevance for human disease

H Allayee, CR Farber, MM Seldin, EG Williams… - Elife, 2023 - elifesciences.org
Quantitative traits are often complex because of the contribution of many loci, with further
complexity added by environmental factors. In medical research, systems genetics is a …

Single-cell RNA sequencing in lung cancer: revealing phenotype shaping of stromal cells in the microenvironment

J Zhang, C Song, Y Tian, X Yang - Frontiers in Immunology, 2022 - frontiersin.org
The lung tumor microenvironment, which is composed of heterogeneous cell populations,
plays an important role in the progression of lung cancer and is closely related to therapeutic …