Partner‐specific prediction of RNA‐binding residues in proteins: A critical assessment
RNA‐protein interactions play essential roles in regulating gene expression. While some
RNA‐protein interactions are “specific”, that is, the RNA‐binding proteins preferentially bind …
RNA‐protein interactions are “specific”, that is, the RNA‐binding proteins preferentially bind …
[PDF][PDF] 蛋白质-DNA 复合物中残基界面偏好性分析及在识别界面中的应用
杨爽, 李春华 - Biophysics, 2022 - pdf.hanspub.org
摘要蛋白质-DNA 识别在生物过程中起着重要作用, 其结合是由序列特异性识别和结构特征共同
影响的. 为了研究残基类型和蛋白质二级结构对结合的贡献, 本文构建了一个新的非冗余蛋白质 …
影响的. 为了研究残基类型和蛋白质二级结构对结合的贡献, 本文构建了一个新的非冗余蛋白质 …
Rad54 phosphorylation promotes homologous recombination by balancing Rad54 mobility and DNA binding
N Lengert, J Spies, B Drossel - Biophysical Journal, 2019 - cell.com
The repair of DNA double-strand breaks by homologous recombination is of crucial
importance for maintaining genomic stability. Two major players during this repair pathway …
importance for maintaining genomic stability. Two major players during this repair pathway …
SARS-CoV-2 infects lung epithelial cells and induces senescence and an inflammatory response in patients with severe COVID-19
K Evangelou, D Veroutis, PG Foukas, K Paschalaki… - bioRxiv, 2021 - biorxiv.org
Rationale SARS-CoV-2 infection of the respiratory system can progress to a life threatening
multi-systemic disease, mediated via an excess of cytokines (“cytokine storm”), but the …
multi-systemic disease, mediated via an excess of cytokines (“cytokine storm”), but the …
HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses
A Kravchenko, SJ De Vries, M Smaïl-Tabbone… - BMC …, 2024 - Springer
Abstract Background The RNA-Recognition motif (RRM) is a protein domain that binds
single-stranded RNA (ssRNA) and is present in as much as 2% of the human genome …
single-stranded RNA (ssRNA) and is present in as much as 2% of the human genome …
Modeling of protein–RNA complex structures using computational docking methods
A significant part of biology involves the formation of RNA–protein complexes. X-ray
crystallography has added a few solved RNA–protein complexes to the repertoire; however …
crystallography has added a few solved RNA–protein complexes to the repertoire; however …
Inhibition of protein interactions: co-crystalized protein–protein interfaces are nearly as good as holo proteins in rigid-body ligand docking
Modulating protein interaction pathways may lead to the cure of many diseases. Known
protein–protein inhibitors bind to large pockets on the protein–protein interface. Such large …
protein–protein inhibitors bind to large pockets on the protein–protein interface. Such large …
Determination of an effective scoring function for RNA–RNA interactions with a physics-based double-iterative method
RNA–RNA interactions play fundamental roles in gene and cell regulation. Therefore,
accurate prediction of RNA–RNA interactions is critical to determine their complex structures …
accurate prediction of RNA–RNA interactions is critical to determine their complex structures …
[PDF][PDF] Matea Hajnic1, 2, Santiago Alonso Gil1, Anton A. Polyansky1, Anita de Ruiter1, 3 &
B Zagrovic1Ε - Scientific Reports, 2022 - researchgate.net
Covalent modifications of standard DNA/RNA nucleobases affect epigenetic regulation of
gene expression by modulating interactions between nucleic acids and protein readers. We …
gene expression by modulating interactions between nucleic acids and protein readers. We …
Advanced computational tools for quantitative analysis of protein–nucleic acid interfaces
S Mukherjee, C Nithin - Advances in Protein Molecular and Structural …, 2022 - Elsevier
Protein–nucleic acids interactions, which involve the binding of protein with RNA or/and
DNA molecules, play crucial roles in many biochemical pathways. Experimental studies of …
DNA molecules, play crucial roles in many biochemical pathways. Experimental studies of …