Virtual interactomics of proteins from biochemical standpoint
J Kubrycht, K Sigler, P Souček - Molecular biology international, 2012 - Wiley Online Library
Virtual interactomics represents a rapidly developing scientific area on the boundary line of
bioinformatics and interactomics. Protein‐related virtual interactomics then comprises …
bioinformatics and interactomics. Protein‐related virtual interactomics then comprises …
蛋白质-RNA 相互作用界面预测与设计
黄阳玉, 阳秀凤, 李昊田, 纪晓峰, 程洪礼, 赵蕴杰… - 物理化学 …, 2012 - whxb.pku.edu.cn
蛋白质-RNA 之间的相互作用是蛋白质在细胞里面行使功能的重要方式之一.
结构生物学家利用实验手段可以得到蛋白质-RNA 复合物的三维结构, 通过原子水平的晶体结构 …
结构生物学家利用实验手段可以得到蛋白质-RNA 复合物的三维结构, 通过原子水平的晶体结构 …
[HTML][HTML] Statistical potentials for RNA-protein interactions optimized by CMA-ES
T Kimura, N Yasuo, M Sekijima, B Lustig - Journal of Molecular Graphics …, 2022 - Elsevier
Characterizing RNA-protein interactions remains an important endeavor, complicated by the
difficulty in obtaining the relevant structures. Evaluating model structures via statistical …
difficulty in obtaining the relevant structures. Evaluating model structures via statistical …
Development of RNA stiffness parameters and analysis on protein-RNA binding specificity: comparison with DNA
M Michael Gromiha - Current Bioinformatics, 2012 - ingentaconnect.com
It has been well established that the elastic character of DNA plays an important role in
protein-DNA binding specificity. In this work, we have analyzed the role of elasticity to …
protein-DNA binding specificity. In this work, we have analyzed the role of elasticity to …
[PDF][PDF] Exploring the RNA Recognition Motif: A computational analysis of RRM-RNA recognition and the interplay between multiple RRM domains
JR Martínez, WF Vranken - 2023 - researchportal.vub.be
The RNA recognition motif (RRM) is the most prevalent RNA-binding protein domain in
eukaryotes and is involved in most of RNA metabolism processes. Their RNA binding …
eukaryotes and is involved in most of RNA metabolism processes. Their RNA binding …
[PDF][PDF] Fragment-based modelling of protein-RNA complexes for protein design
A Kravchenko - 2023 - theses.hal.science
3.2. 1 Coarse-Grained Representation ssRNA'TTRACT uses a coarse-grained
representation and a knowledge-based scoring function [168, 257, 256]. Each amino acid is …
representation and a knowledge-based scoring function [168, 257, 256]. Each amino acid is …
Molecular-Docking-Based Anti-Allergic Drug Design
Allergens are foreign proteins that when come in contact of part (s) of human body stimulate
the production of immunoglobulin types of proteins (antibodies). These allergens react with …
the production of immunoglobulin types of proteins (antibodies). These allergens react with …
Bioinformatic Methods to Discover Cis-regulatory Elements in mRNAs
SG Stevens, CM Brown - Springer Handbook of Bio-/Neuroinformatics, 2014 - Springer
Cis-regulatory elements play a number of important roles in determining the fate of
messenger RNAs (mRNAs). Due to these elements, mRNAs may be translated with …
messenger RNAs (mRNAs). Due to these elements, mRNAs may be translated with …
[PDF][PDF] Homology modeling of the complex between the Repressor of Primer protein and its cognate RNA kissing complex
D Nikolopoulou - 2022 - utopia.duth.gr
The ROP protein is a dimeric protein with an α-helix bundle conformation that is found in
bacteria. ROP protein is involved in the replication regulation mechanism of the …
bacteria. ROP protein is involved in the replication regulation mechanism of the …
[HTML][HTML] Scoring functions for protein-RNA complex structure prediction: advances, applications, and future directions
L Qiu, X Zou - Communications in information and systems, 2020 - ncbi.nlm.nih.gov
Protein-RNA interaction is among the most essential of biological events in living cells,
being involved in protein synthesizing, RNA processing and transport, DNA transcription …
being involved in protein synthesizing, RNA processing and transport, DNA transcription …