Phenomic selection is a low-cost and high-throughput method based on indirect predictions: proof of concept on wheat and poplar
R Rincent, JP Charpentier… - G3: Genes …, 2018 - academic.oup.com
Genomic selection-the prediction of breeding values using DNA polymorphisms-is a
disruptive method that has widely been adopted by animal and plant breeders to increase …
disruptive method that has widely been adopted by animal and plant breeders to increase …
Enviromics in breeding: applications and perspectives on envirotypic-assisted selection
Key message We propose the application of enviromics to breeding practice, by which the
similarity among sites assessed on an “omics” scale of environmental attributes drives the …
similarity among sites assessed on an “omics” scale of environmental attributes drives the …
High-throughput phenotyping enabled genetic dissection of crop lodging in wheat
Novel high-throughput phenotyping (HTP) approaches are needed to advance the
understanding of genotype-to-phenotype and accelerate plant breeding. The first generation …
understanding of genotype-to-phenotype and accelerate plant breeding. The first generation …
lme4qtl: linear mixed models with flexible covariance structure for genetic studies of related individuals
A Ziyatdinov, M Vázquez-Santiago, H Brunel… - BMC …, 2018 - Springer
Background Quantitative trait locus (QTL) mapping in genetic data often involves analysis of
correlated observations, which need to be accounted for to avoid false association signals …
correlated observations, which need to be accounted for to avoid false association signals …
Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize
TA Schrag, M Westhues, W Schipprack, F Seifert… - Genetics, 2018 - academic.oup.com
The ability to predict the agronomic performance of single-crosses with high precision is
essential for selecting superior candidates for hybrid breeding. With recent technological …
essential for selecting superior candidates for hybrid breeding. With recent technological …
Association analyses of host genetics, root-colonizing microbes, and plant phenotypes under different nitrogen conditions in maize
MA Meier, G Xu, MG Lopez-Guerrero, G Li, C Smith… - Elife, 2022 - elifesciences.org
The root-associated microbiome (rhizobiome) affects plant health, stress tolerance, and
nutrient use efficiency. However, it remains unclear to what extent the composition of the …
nutrient use efficiency. However, it remains unclear to what extent the composition of the …
Genome-wide association and genotype by environment interactions for growth traits in US Red Angus cattle
Background Genotypic information produced from single nucleotide polymorphism (SNP)
arrays has routinely been used to identify genomic regions associated with complex traits in …
arrays has routinely been used to identify genomic regions associated with complex traits in …
Cell membrane stability and association mapping for drought and heat tolerance in a worldwide wheat collection
I ElBasyoni, M Saadalla, S Baenziger, H Bockelman… - Sustainability, 2017 - mdpi.com
Worldwide periods of heat and drought are projected to be more frequent, longer, and
occurring earlier, which could deleteriously affect the productivity of cool-season crops …
occurring earlier, which could deleteriously affect the productivity of cool-season crops …
Distinct genetic architectures for phenotype means and plasticities in Zea mays
Phenotypic plasticity describes the phenotypic variation of a trait when a genotype is
exposed to different environments. Understanding the genetic control of phenotypic plasticity …
exposed to different environments. Understanding the genetic control of phenotypic plasticity …
Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range
A fundamental goal in plant microbiome research is to determine the relative impacts of host
and environmental effects on root microbiota composition, particularly how host genotype …
and environmental effects on root microbiota composition, particularly how host genotype …