Phenomic selection is a low-cost and high-throughput method based on indirect predictions: proof of concept on wheat and poplar

R Rincent, JP Charpentier… - G3: Genes …, 2018 - academic.oup.com
Genomic selection-the prediction of breeding values using DNA polymorphisms-is a
disruptive method that has widely been adopted by animal and plant breeders to increase …

Enviromics in breeding: applications and perspectives on envirotypic-assisted selection

RT Resende, HP Piepho, GJM Rosa… - Theoretical and Applied …, 2021 - Springer
Key message We propose the application of enviromics to breeding practice, by which the
similarity among sites assessed on an “omics” scale of environmental attributes drives the …

High-throughput phenotyping enabled genetic dissection of crop lodging in wheat

D Singh, X Wang, U Kumar, L Gao, M Noor… - Frontiers in plant …, 2019 - frontiersin.org
Novel high-throughput phenotyping (HTP) approaches are needed to advance the
understanding of genotype-to-phenotype and accelerate plant breeding. The first generation …

lme4qtl: linear mixed models with flexible covariance structure for genetic studies of related individuals

A Ziyatdinov, M Vázquez-Santiago, H Brunel… - BMC …, 2018 - Springer
Background Quantitative trait locus (QTL) mapping in genetic data often involves analysis of
correlated observations, which need to be accounted for to avoid false association signals …

Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize

TA Schrag, M Westhues, W Schipprack, F Seifert… - Genetics, 2018 - academic.oup.com
The ability to predict the agronomic performance of single-crosses with high precision is
essential for selecting superior candidates for hybrid breeding. With recent technological …

Association analyses of host genetics, root-colonizing microbes, and plant phenotypes under different nitrogen conditions in maize

MA Meier, G Xu, MG Lopez-Guerrero, G Li, C Smith… - Elife, 2022 - elifesciences.org
The root-associated microbiome (rhizobiome) affects plant health, stress tolerance, and
nutrient use efficiency. However, it remains unclear to what extent the composition of the …

Genome-wide association and genotype by environment interactions for growth traits in US Red Angus cattle

JL Smith, ML Wilson, SM Nilson, TN Rowan… - BMC genomics, 2022 - Springer
Background Genotypic information produced from single nucleotide polymorphism (SNP)
arrays has routinely been used to identify genomic regions associated with complex traits in …

Cell membrane stability and association mapping for drought and heat tolerance in a worldwide wheat collection

I ElBasyoni, M Saadalla, S Baenziger, H Bockelman… - Sustainability, 2017 - mdpi.com
Worldwide periods of heat and drought are projected to be more frequent, longer, and
occurring earlier, which could deleteriously affect the productivity of cool-season crops …

Distinct genetic architectures for phenotype means and plasticities in Zea mays

A Kusmec, S Srinivasan, D Nettleton, PS Schnable - Nature plants, 2017 - nature.com
Phenotypic plasticity describes the phenotypic variation of a trait when a genotype is
exposed to different environments. Understanding the genetic control of phenotypic plasticity …

Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range

JA Edwards, UB Saran, J Bonnette, A MacQueen, J Yin… - Current Biology, 2023 - cell.com
A fundamental goal in plant microbiome research is to determine the relative impacts of host
and environmental effects on root microbiota composition, particularly how host genotype …