Multitrait Bayesian shrinkage and variable selection models with the BGLR-R package

P Pérez-Rodríguez, G de Los Campos - Genetics, 2022 - academic.oup.com
The BGLR-R package implements various types of single-trait shrinkage/variable selection
Bayesian regressions. The package was first released in 2014, since then it has become a …

[HTML][HTML] Genome-wide scan of wool production traits in akkaraman sheep

Y Arzik, M Kizilaslan, S Behrem, SN White, LMW Piel… - Genes, 2023 - mdpi.com
The objective of this study was to uncover the genetic background of wool quality, a
production trait, by estimating genomic heritability and implementing GWAS in Akkaraman …

Genome‐wide association of volatiles reveals candidate loci for blueberry flavor

LFV Ferrão, TS Johnson, J Benevenuto… - New …, 2020 - Wiley Online Library
Plants produce a range of volatile organic compounds (VOCs), some of which are perceived
by the human olfactory system, contributing to a myriad flavors. Despite the importance of …

[HTML][HTML] Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid …

DC Gemenet, G da Silva Pereira, B De Boeck… - Theoretical and Applied …, 2020 - Springer
Key message β-Carotene content in sweetpotato is associated with the Orange and
phytoene synthase genes; due to physical linkage of phytoene synthase with sucrose …

[HTML][HTML] Factors affecting genomic selection revealed by empirical evidence in maize

X Liu, H Wang, H Wang, Z Guo, X Xu, J Liu, S Wang… - The Crop Journal, 2018 - Elsevier
Genomic selection (GS) as a promising molecular breeding strategy has been widely
implemented and evaluated for plant breeding, because it has remarkable superiority in …

[HTML][HTML] The interplay of additivity, dominance, and epistasis on fitness in a diploid yeast cross

T Matsui, MN Mullis, KR Roy, JJ Hale, R Schell… - Nature …, 2022 - nature.com
In diploid species, genetic loci can show additive, dominance, and epistatic effects. To
characterize the contributions of these different types of genetic effects to heritable traits, we …

[HTML][HTML] Genetic gains underpinning a little-known strawberry Green Revolution

MJ Feldmann, DDA Pincot, GS Cole… - Nature …, 2024 - nature.com
The annual production of strawberry has increased by one million tonnes in the US and 8.4
million tonnes worldwide since 1960. Here we show that the US expansion was driven by …

[HTML][HTML] Haplotype blocks for genomic prediction: a comparative evaluation in multiple crop datasets

SE Weber, M Frisch, RJ Snowdon… - Frontiers in Plant …, 2023 - frontiersin.org
In modern plant breeding, genomic selection is becoming the gold standard for selection of
superior genotypes. The basis for genomic prediction models is a set of phenotyped lines …

[HTML][HTML] Simultaneous selection for grain yield and protein content in genomics-assisted wheat breeding

S Michel, F Löschenberger, C Ametz, B Pachler… - Theoretical and Applied …, 2019 - Springer
Key message Large genetic improvement can be achieved by simultaneous genomic
selection for grain yield and protein content when combining different breeding strategies in …

Sorghum Association Panel whole‐genome sequencing establishes cornerstone resource for dissecting genomic diversity

JL Boatwright, S Sapkota, H Jin, JC Schnable… - The Plant …, 2022 - Wiley Online Library
Association mapping panels represent foundational resources for understanding the genetic
basis of phenotypic diversity and serve to advance plant breeding by exploring genetic …