Deciphering environmental signal integration in σ54-dependent promoters with a simple mathematical model

SJ Van Dien, V de Lorenzo - Journal of theoretical biology, 2003 - Elsevier
A mathematical model was developed to describe the physiological co-regulation of two
Pseudomonasσ54-dependent promoter/regulator systems, Pu/XylR and Po/DmpR of …

An artificial enhancer with multiple response elements stimulates prokaryotic transcriptional activation mediated by various regulatory proteins

JA Molina-Lopez, E Santero - Molecular and General Genetics MGG, 1999 - Springer
Regulation of transcription by the form of RNA polymerase that contains σ N involves
activation at a distance by activators bound to sites located far upstream of the transcription …

Exploring prokaryotic diversity: there are other molecular worlds

LA Fernández - 2005 - Wiley Online Library
Prokaryotes are the major source of biological diversity on earth. This is not simply because
of the large number of species present, or because of their diverse growth conditions and …

The Genus Pseudomonas

L Ramos-Hegazy, S Chakravarty… - Practical Handbook of …, 2021 - taylorfrancis.com
Members of the Gram-negative bacterial genus Pseudomonas are ubiquitous in soil and
water ecosystems. Amongst amino acids, arginine metabolism, especially, is key in …

Rationally rewiring the connectivity of the XylR/Pu regulatory node of the m-xylene degradation pathway in Pseudomonas putida

A De Las Heras, E Martínez-García… - Integrative …, 2016 - academic.oup.com
Abstract The XylR/Pu regulatory node of the m-xylene biodegradation pathway of
Pseudomonas putida mt-2 is one of the most intricate cases of processing internal and …

Widening functional boundaries of the σ 54 promoter Pu of Pseudomonas putida by defeating extant physiological constraints

A de las Heras, E Martínez-García… - Molecular …, 2015 - pubs.rsc.org
The extant layout of the σ54 promoter Pu, harboured by the catabolic TOL plasmid, pWW0,
of Pseudomonas putida is one of the most complex instances of endogenous and …

[图书][B] Multiple levels of regulation in toluene-3-monooxygenase containing bacterium

JC Malinverni - 2003 - search.proquest.com
The degradation of monocyclic aromatic hydrocarbons by bacteria is a highly regulated
process that takes place under defined environmental conditions. The catabolic pathways …

Evidence for self‐association of the alternative sigma factor σ54

M Sabbatini, A Vezzoli, M Milani, G Bertoni - The FEBS Journal, 2013 - Wiley Online Library
Sigma factor σ54 has a distinct modus operandi for mediating the activation of bacterial RNA
polymerase (RNAP) at promoter recognition motifs 12 and 24 bp upstream from transcription …

[PDF][PDF] Growth phase-specific promoters of cyanobacteria for synthetic biology applications

MA Madsen - 2016 - theses.gla.ac.uk
Cyanobacteria are a diverse group of photosynthetic gram-negative bacteria able to tap into
virtually unlimited solar energy supplies and convert it into chemical energy and biomass …

[图书][B] Activation of phage shock protein operon transcription in Escherichia coli

GB Jovanovic - 1997 - search.proquest.com
This thesis analyzes the function of the regulatory elements and the activation of $\sigma\sp
{54} $-dependent transcription of the stress-induced phage shock protein (psp) operon …