Artificial intelligence and machine learning approaches for drug design: challenges and opportunities for the pharmaceutical industries
C Selvaraj, I Chandra, SK Singh - Molecular diversity, 2021 - Springer
The global spread of COVID-19 has raised the importance of pharmaceutical drug
development as intractable and hot research. Developing new drug molecules to overcome …
development as intractable and hot research. Developing new drug molecules to overcome …
Featurization strategies for protein–ligand interactions and their applications in scoring function development
The predictive performance of classical scoring functions (SFs) seems to have reached a
plateau. Currently, SFs relying on sophisticated machine learning techniques have shown …
plateau. Currently, SFs relying on sophisticated machine learning techniques have shown …
On the frustration to predict binding affinities from protein–ligand structures with deep neural networks
Accurate prediction of binding affinities from protein–ligand atomic coordinates remains a
major challenge in early stages of drug discovery. Using modular message passing graph …
major challenge in early stages of drug discovery. Using modular message passing graph …
[HTML][HTML] DTITR: End-to-end drug–target binding affinity prediction with transformers
The accurate identification of Drug–Target Interactions (DTIs) remains a critical turning point
in drug discovery and understanding of the binding process. Despite recent advances in …
in drug discovery and understanding of the binding process. Despite recent advances in …
Integrating Artificial Intelligence for Drug Discovery in the Context of Revolutionizing Drug Delivery
Drug development is expensive, time-consuming, and has a high failure rate. In recent
years, artificial intelligence (AI) has emerged as a transformative tool in drug discovery …
years, artificial intelligence (AI) has emerged as a transformative tool in drug discovery …
Artificial intelligence and cheminformatics tools: a contribution to the drug development and chemical science
I Saifi, BA Bhat, SS Hamdani, UY Bhat… - Journal of …, 2024 - Taylor & Francis
In the ever-evolving field of drug discovery, the integration of Artificial Intelligence (AI) and
Machine Learning (ML) with cheminformatics has proven to be a powerful combination …
Machine Learning (ML) with cheminformatics has proven to be a powerful combination …
Machine Learning for Sequence and Structure-Based Protein–Ligand Interaction Prediction
Y Zhang, S Li, K Meng, S Sun - Journal of Chemical Information …, 2024 - ACS Publications
Developing new drugs is too expensive and time-consuming. Accurately predicting the
interaction between drugs and targets will likely change how the drug is discovered …
interaction between drugs and targets will likely change how the drug is discovered …
Water network-augmented two-state model for protein–ligand binding affinity prediction
X Qu, L Dong, D Luo, Y Si, B Wang - Journal of Chemical …, 2023 - ACS Publications
Water network rearrangement from the ligand-unbound state to the ligand-bound state is
known to have significant effects on the protein–ligand binding interactions, but most of the …
known to have significant effects on the protein–ligand binding interactions, but most of the …
Plas-5k: Dataset of protein-ligand affinities from molecular dynamics for machine learning applications
Computational methods and recently modern machine learning methods have played a key
role in structure-based drug design. Though several benchmarking datasets are available …
role in structure-based drug design. Though several benchmarking datasets are available …
DOX_BDW: incorporating solvation and desolvation effects of cavity water into nonfitting protein–ligand binding affinity prediction
J Liu, J Wan, Y Ren, X Shao, X Xu… - Journal of Chemical …, 2023 - ACS Publications
Accurate prediction of the protein–ligand binding affinity (PLBA) with an affordable cost is
one of the ultimate goals in the field of structure-based drug design (SBDD), as well as a …
one of the ultimate goals in the field of structure-based drug design (SBDD), as well as a …