Programmed genome rearrangements in ciliates

I Rzeszutek, XX Maurer-Alcalá, M Nowacki - Cellular and Molecular Life …, 2020 - Springer
Ciliates are a highly divergent group of unicellular eukaryotes with separate somatic and
germline genomes found in distinct dimorphic nuclei. This characteristic feature is tightly …

Dynamic DNA N6-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus

Y Liu, J Niu, F Ye, T Solberg, B Lu, C Wang… - Genome …, 2024 - genome.cshlp.org
The formation of resting cysts commonly found in unicellular eukaryotes is a complex and
highly regulated survival strategy against environmental stress that involves drastic …

Broad domains of histone marks in the highly compact Paramecium macronuclear genome

F Drews, A Salhab, S Karunanithi, M Cheaib… - Genome …, 2022 - genome.cshlp.org
The unicellular ciliate Paramecium contains a large vegetative macronucleus with several
unusual characteristics, including an extremely high coding density and high polyploidy. As …

Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus

BKB Seah, A Singh, DE Vetter, C Emmerich… - Proceedings of the …, 2024 - pnas.org
Most eukaryotes have one nucleus and nuclear genome per cell. Ciliates have instead
evolved distinct nuclei that coexist in each cell: a silent germline vs. transcriptionally active …

Coevolution of the CDCA7-HELLS ICF-related nucleosome remodeling complex and DNA methyltransferases

H Funabiki, IE Wassing, Q Jia, JD Luo, T Carroll - Elife, 2023 - elifesciences.org
Methylcytosine (5mC) and DNA methyltransferases (DNMTs) are broadly conserved in
eukaryotes but are also frequently lost during evolution. The mammalian SNF2 family …

Adenine DNA methylation, 3D genome organization, and gene expression in the parasite Trichomonas vaginalis

A Lizarraga, ZK O'Brown, K Boulias… - Proceedings of the …, 2020 - National Acad Sciences
Trichomonas vaginalis is a common sexually transmitted parasite that colonizes the human
urogenital tract causing infections that range from asymptomatic to highly inflammatory …

The Roles of Transposable Elements in Transgenerational Inheritance and Genome Evolution

BA Stefanov, M Nowacki - Epigenetics in Biological Communication, 2024 - Springer
Transposable elements and related DNA sequences, such as remnants of retrotransposons,
constitute a substantial portion of eukaryotic genomes. The widespread presence of these …

Epigenetic Response of Yarrowia lipolytica to Stress: Tracking Methylation Level and Search for Methylation Patterns via Whole-Genome Sequencing

M Kubiak-Szymendera, LP Pryszcz, W Białas… - Microorganisms, 2021 - mdpi.com
DNA methylation is a common, but not universal, epigenetic modification that plays an
important role in multiple cellular processes. While definitely settled for numerous plant …

Characterization of DNA Methylation in Giardia intestinalis

H Agongo - 2021 - diva-portal.org
G. intestinalis is an intestinal protozoan parasite that causes 180 million symptomatic
diarrheacases (giardiasis) and more than 0.5 billion asymptomatic infections per year …

Exploring the link between adenine DNA methylation and 3D genome organization in the parasite Trichomonas vaginalis

A Lizarraga, ZK O'Brown, L Roach, EL Greer… - bioRxiv, 2019 - biorxiv.org
Trichomonas vaginalis is a common sexually transmitted parasite that colonizes the human
urogenital tract causing infections that range from asymptomatic to highly inflammatory …