[HTML][HTML] A review of deep learning applications for genomic selection

OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …

A comprehensive review of high throughput phenotyping and machine learning for plant stress phenotyping

T Gill, SK Gill, DK Saini, Y Chopra, JP de Koff… - Phenomics, 2022 - Springer
During the last decade, there has been rapid adoption of ground and aerial platforms with
multiple sensors for phenotyping various biotic and abiotic stresses throughout the …

[HTML][HTML] Next-generation breeding strategies for climate-ready crops

A Razzaq, P Kaur, N Akhter, SH Wani… - Frontiers in Plant …, 2021 - frontiersin.org
Climate change is a threat to global food security due to the reduction of crop productivity
around the globe. Food security is a matter of concern for stakeholders and policymakers as …

[HTML][HTML] A review of deep learning applications in human genomics using next-generation sequencing data

WS Alharbi, M Rashid - Human Genomics, 2022 - Springer
Genomics is advancing towards data-driven science. Through the advent of high-throughput
data generating technologies in human genomics, we are overwhelmed with the heap of …

[HTML][HTML] Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data

H Tong, Z Nikoloski - Journal of plant physiology, 2021 - Elsevier
Highly efficient and accurate selection of elite genotypes can lead to dramatic shortening of
the breeding cycle in major crops relevant for sustaining present demands for food, feed …

[HTML][HTML] Deep learning for predicting complex traits in spring wheat breeding program

KS Sandhu, DN Lozada, Z Zhang… - Frontiers in Plant …, 2021 - frontiersin.org
Genomic selection (GS) is transforming the field of plant breeding and implementing models
that improve prediction accuracy for complex traits is needed. Analytical methods for …

[HTML][HTML] Genomic selection: A breakthrough technology in rice breeding

Y Xu, K Ma, Y Zhao, X Wang, K Zhou, G Yu, C Li, P Li… - The Crop Journal, 2021 - Elsevier
Rice (Oryza sativa) provides a staple food source for more than half the world population.
However, the current pace of rice breeding in yield growth is insufficient to meet the food …

Multitrait machine‐and deep‐learning models for genomic selection using spectral information in a wheat breeding program

K Sandhu, SS Patil, M Pumphrey, A Carter - The Plant Genome, 2021 - Wiley Online Library
Prediction of breeding values is central to plant breeding and has been revolutionized by the
adoption of genomic selection (GS). Use of machine‐and deep‐learning algorithms applied …

PANOMICS meets germplasm

W Weckwerth, A Ghatak, A Bellaire… - Plant Biotechnology …, 2020 - Wiley Online Library
Genotyping‐by‐sequencing has enabled approaches for genomic selection to improve
yield, stress resistance and nutritional value. More and more resource studies are emerging …

[HTML][HTML] Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species

LM Zingaretti, SA Gezan, LFV Ferrão… - Frontiers in plant …, 2020 - frontiersin.org
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates
are predicted using genome wide marker information. Although numerous examples of GP …