Machine learning methods for small data challenges in molecular science
B Dou, Z Zhu, E Merkurjev, L Ke, L Chen… - Chemical …, 2023 - ACS Publications
Small data are often used in scientific and engineering research due to the presence of
various constraints, such as time, cost, ethics, privacy, security, and technical limitations in …
various constraints, such as time, cost, ethics, privacy, security, and technical limitations in …
Deep learning methods for molecular representation and property prediction
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …
predict molecular property through diversified models.•One, two, and three-dimensional …
Uni-mol: A universal 3d molecular representation learning framework
Molecular representation learning (MRL) has gained tremendous attention due to its critical
role in learning from limited supervised data for applications like drug design. In most MRL …
role in learning from limited supervised data for applications like drug design. In most MRL …
Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework
The clinical efficacy and safety of a drug is determined by its molecular properties and
targets in humans. However, proteome-wide evaluation of all compounds in humans, or …
targets in humans. However, proteome-wide evaluation of all compounds in humans, or …
Contrastive learning of subject-invariant EEG representations for cross-subject emotion recognition
EEG signals have been reported to be informative and reliable for emotion recognition in
recent years. However, the inter-subject variability of emotion-related EEG signals still poses …
recent years. However, the inter-subject variability of emotion-related EEG signals still poses …
Explainable graph wavelet denoising network for intelligent fault diagnosis
Deep learning (DL)-based intelligent fault diagnosis methods have greatly promoted the
development of the field of fault diagnosis due to their powerful feature extraction ability for …
development of the field of fault diagnosis due to their powerful feature extraction ability for …
Mole-bert: Rethinking pre-training graph neural networks for molecules
Recent years have witnessed the prosperity of pre-training graph neural networks (GNNs)
for molecules. Typically, atom types as node attributes are randomly masked and GNNs are …
for molecules. Typically, atom types as node attributes are randomly masked and GNNs are …
A survey of graph neural networks in various learning paradigms: methods, applications, and challenges
In the last decade, deep learning has reinvigorated the machine learning field. It has solved
many problems in computer vision, speech recognition, natural language processing, and …
many problems in computer vision, speech recognition, natural language processing, and …
Fractional denoising for 3d molecular pre-training
Coordinate denoising is a promising 3D molecular pre-training method, which has achieved
remarkable performance in various downstream drug discovery tasks. Theoretically, the …
remarkable performance in various downstream drug discovery tasks. Theoretically, the …
Equivariant graph neural networks for toxicity prediction
J Cremer, L Medrano Sandonas… - Chemical Research …, 2023 - ACS Publications
Predictive modeling of toxicity is a crucial step in the drug discovery pipeline. It can help filter
out molecules with a high probability of failing in the early stages of de novo drug design …
out molecules with a high probability of failing in the early stages of de novo drug design …