Prevalence of transcription factors in ascomycete and basidiomycete fungi

RB Todd, M Zhou, RA Ohm, HACF Leeggangers… - BMC genomics, 2014 - Springer
Background Gene regulation underlies fungal physiology and therefore is a major factor in
fungal biodiversity. Analysis of genome sequences has revealed a large number of putative …

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

A Levasseur, A Lomascolo, O Chabrol… - BMC genomics, 2014 - Springer
Background Saprophytic filamentous fungi are ubiquitous micro-organisms that play an
essential role in photosynthetic carbon recycling. The wood-decayer Pycnoporus …

Occurrence and function of enzymes for lignocellulose degradation in commercial Agaricus bisporus cultivation

MA Kabel, E Jurak, MR Mäkelä, RP De Vries - Applied Microbiology and …, 2017 - Springer
The white button mushroom Agaricus bisporus is economically the most important
commercially produced edible fungus. It is grown on carbon-and nitrogen-rich substrates …

Widespread occurrence of expressed fungal secretory peroxidases in forest soils

H Kellner, P Luis, MJ Pecyna, F Barbi, D Kapturska… - PLoS …, 2014 - journals.plos.org
Fungal secretory peroxidases mediate fundamental ecological functions in the conversion
and degradation of plant biomass. Many of these enzymes have strong oxidizing activities …

Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life

BTM Dentinger, E Gaya, H O'Brien… - Biological Journal of …, 2016 - academic.oup.com
The enormity of the breadth and depth of specimens held within the world's biological
collections offers unparalleled opportunities to capture genomic data from across the entire …

Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

É Almási, N Sahu, K Krizsán, B Bálint… - New …, 2019 - Wiley Online Library
Agaricomycetes are fruiting body‐forming fungi that produce some of the most efficient
enzyme systems to degrade wood. Despite decades‐long interest in their biology, the …

Phylogenetics and phylogenomics of rust fungi

MC Aime, AR McTaggart, SJ Mondo, S Duplessis - Advances in genetics, 2017 - Elsevier
Rust fungi (Pucciniales) are the most speciose and the most complex group of plant
pathogens. Historically, rust taxonomy was largely influenced by host and phenotypic …

High-throughput targeted gene deletion in the model mushroom Schizophyllum commune using pre-assembled Cas9 ribonucleoproteins

P Jan Vonk, N Escobar, HAB Wösten, LG Lugones… - Scientific reports, 2019 - nature.com
Efficient gene deletion methods are essential for the high-throughput study of gene function.
Compared to most ascomycete model systems, gene deletion is more laborious in …

Fate of Carbohydrates and Lignin during Composting and Mycelium Growth of Agaricus bisporus on Wheat Straw Based Compost

E Jurak, AM Punt, W Arts, MA Kabel, H Gruppen - PloS one, 2015 - journals.plos.org
In wheat straw based composting, enabling growth of Agaricus bisporus mushrooms, it is
unknown to which extent the carbohydrate-lignin matrix changes and how much is …

Genome sequencing of Cladophialophora exuberans, a novel candidate for bioremediation of hydrocarbon and heavy metal polluted habitats

NM da Silva, GF Reis, F de Fátima Costa, ME Grisolia… - Fungal Biology, 2023 - Elsevier
Cladophialophora exuberans is a filamentous fungus related to black yeasts in the order
Chaetothyriales. These melanized fungi are known for their 'dual ecology', often occurring in …