Best practices for single-cell analysis across modalities
Recent advances in single-cell technologies have enabled high-throughput molecular
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
Energy-driven genome regulation by ATP-dependent chromatin remodellers
The packaging of DNA into chromatin in eukaryotes regulates gene transcription, DNA
replication and DNA repair. ATP-dependent chromatin remodelling enzymes (re) arrange …
replication and DNA repair. ATP-dependent chromatin remodelling enzymes (re) arrange …
Chromatin accessibility: methods, mechanisms, and biological insights
AR Mansisidor, VI Risca - Nucleus, 2022 - Taylor & Francis
Access to DNA is a prerequisite to the execution of essential cellular processes that include
transcription, replication, chromosomal segregation, and DNA repair. How the proteins that …
transcription, replication, chromosomal segregation, and DNA repair. How the proteins that …
Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex
In Saccharomyces cerevisiae, cryptic transcription at the coding region is prevented by the
activity of Sin3 histone deacetylase (HDAC) complex Rpd3S, which is carried by the …
activity of Sin3 histone deacetylase (HDAC) complex Rpd3S, which is carried by the …
[HTML][HTML] Systematic epigenome editing captures the context-dependent instructive function of chromatin modifications
C Policarpi, M Munafò, S Tsagkris, V Carlini… - Nature Genetics, 2024 - nature.com
Chromatin modifications are linked with regulating patterns of gene expression, but their
causal role and context-dependent impact on transcription remains unresolved. Here we …
causal role and context-dependent impact on transcription remains unresolved. Here we …
Pioneer activity distinguishes activating from non‐activating SOX2 binding sites
M Maresca, T van den Brand, H Li, H Teunissen… - The EMBO …, 2023 - embopress.org
Genome‐wide transcriptional activity involves the binding of many transcription factors (TFs)
to thousands of sites in the genome. Pioneer TFs are a class of TFs that maintain open …
to thousands of sites in the genome. Pioneer TFs are a class of TFs that maintain open …
Cotranscriptional RNA processing and modification in plants
The activities of RNA polymerases shape the epigenetic landscape of genomes with
profound consequences for genome integrity and gene expression. A fundamental event …
profound consequences for genome integrity and gene expression. A fundamental event …
New genetic and epigenetic insights into the chemokine system: the latest discoveries aiding progression toward precision medicine
H Xu, S Lin, Z Zhou, D Li, X Zhang, M Yu… - Cellular & Molecular …, 2023 - nature.com
Over the past thirty years, the importance of chemokines and their seven-transmembrane G
protein-coupled receptors (GPCRs) has been increasingly recognized. Chemokine …
protein-coupled receptors (GPCRs) has been increasingly recognized. Chemokine …
Dynamic nucleosome remodeling mediated by YY1 underlies early mouse development
M Sakamoto, S Abe, Y Miki, Y Miyanari… - Genes & …, 2023 - genesdev.cshlp.org
Nucleosome positioning can alter the accessibility of DNA-binding proteins to their cognate
DNA elements, and thus its precise control is essential for cell identity and function …
DNA elements, and thus its precise control is essential for cell identity and function …
ZFP462 safeguards neural lineage specification by targeting G9A/GLP-mediated heterochromatin to silence enhancers
R Yelagandula, K Stecher, M Novatchkova… - Nature cell …, 2023 - nature.com
ZNF462 haploinsufficiency is linked to Weiss–Kruszka syndrome, a genetic disorder
characterized by neurodevelopmental defects, including autism. Though conserved in …
characterized by neurodevelopmental defects, including autism. Though conserved in …