[HTML][HTML] Machine learning in materials chemistry: An invitation

D Packwood, LTH Nguyen, P Cesana, G Zhang… - Machine Learning with …, 2022 - Elsevier
Materials chemistry is being profoundly influenced by the uptake of machine learning
methodologies. Machine learning techniques, in combination with established techniques …

Current updates on computer aided protein modeling and designing

FI Khan, DQ Wei, KR Gu, MI Hassan… - International journal of …, 2016 - Elsevier
Determination of the three dimensional (3D) structure of a protein can provide important
details about its biological functions and mechanism of action. However, despite their …

[PDF][PDF] Isolation of a structural mechanism for uncoupling T cell receptor signaling from peptide-MHC binding

LV Sibener, RA Fernandes, EM Kolawole, CB Carbone… - Cell, 2018 - cell.com
TCR-signaling strength generally correlates with peptide-MHC binding affinity; however,
exceptions exist. We find high-affinity, yet non-stimulatory, interactions occur with high …

Molecular dynamics simulation of protein and protein–ligand complexes

R Shukla, T Tripathi - Computer-aided drug design, 2020 - Springer
Biomacromolecules, including proteins and their complexes, adopt multiple conformations
that are linked to their biological functions. Though some of the structural heterogeneity can …

[HTML][HTML] Perspective: Identification of collective variables and metastable states of protein dynamics

F Sittel, G Stock - The Journal of chemical physics, 2018 - pubs.aip.org
The statistical analysis of molecular dynamics simulations requires dimensionality reduction
techniques, which yield a low-dimensional set of collective variables (CVs){xi}= x that in …

Identification and evaluation of bioactive natural products as potential inhibitors of human microtubule affinity-regulating kinase 4 (MARK4)

T Mohammad, FI Khan, KA Lobb, A Islam… - Journal of …, 2019 - Taylor & Francis
Microtubule affinity-regulating kinase 4 (MARK4) has recently been identified as a potential
drug target for several complex diseases including cancer, diabetes and neurodegenerative …

[HTML][HTML] AI applications in functional genomics

C Caudai, A Galizia, F Geraci, L Le Pera… - Computational and …, 2021 - Elsevier
We review the current applications of artificial intelligence (AI) in functional genomics. The
recent explosion of AI follows the remarkable achievements made possible by “deep …

A constraints-based approach to the acquisition of expertise in outdoor adventure sports

K Davids, E Brymer, L Seifert, D Orth - Complex systems in sport, 2013 - taylorfrancis.com
The challenge for understanding coordination was introduced by Meijer (2001) as 'Charles'
problem'(Charles V, 1500-1558) in reference of the longstanding difficulty in comprehending …

Principal component analysis and related methods for investigating the dynamics of biological macromolecules

A Kitao - J, 2022 - mdpi.com
Principal component analysis (PCA) is used to reduce the dimensionalities of high-
dimensional datasets in a variety of research areas. For example, biological …

Investigation of molecular mechanism of recognition between citral and MARK4: A newer therapeutic approach to attenuate cancer cell progression

F Naz, FI Khan, T Mohammad, P Khan… - International journal of …, 2018 - Elsevier
Microtubule affinity regulating kinase 4 (MARK4) is a member of AMP-activated protein
kinase, found to be involved in apoptosis, inflammation and many other regulatory …