[HTML][HTML] Novel approaches for species concepts and delimitation in polyploids and hybrids

E Hörandl - Plants, 2022 - mdpi.com
Hybridization and polyploidization are important processes for plant evolution. However,
classification of hybrid or polyploid species has been notoriously difficult because of the …

[PDF][PDF] Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

M Colle, CP Leisner, CM Wai, S Ou, KA Bird… - …, 2019 - academic.oup.com
Abstract Background Highbush blueberry (Vaccinium corymbosum) has long been
consumed for its unique flavor and composition of health-promoting phytonutrients …

Homeolog expression quantification methods for allopolyploids

TCY Kuo, M Hatakeyama, T Tameshige… - Briefings in …, 2020 - academic.oup.com
Genome duplication with hybridization, or allopolyploidization, occurs in animals, fungi and
plants, and is especially common in crop plants. There is an increasing interest in the study …

[HTML][HTML] Transcriptome Dynamics of the Inflorescence in Reciprocally Formed Allopolyploid Tragopogon miscellus (Asteraceae)

S Shan, JL Boatwright, X Liu, AS Chanderbali… - Frontiers in …, 2020 - frontiersin.org
Polyploidy is an important evolutionary mechanism and is prevalent among land plants.
Most polyploid species examined have multiple origins, which provide genetic diversity and …

Reciprocal allopolyploid grasses (Festuca × Lolium) display stable patterns of genome dominance

M Glombik, D Copetti, J Bartos, S Stoces… - The Plant …, 2021 - Wiley Online Library
Allopolyploidization entailing the merger of two distinct genomes in a single hybrid
organism, is an important process in plant evolution and a valuable tool in breeding …

A low-coverage 3′ RNA-seq to detect homeolog expression in polyploid wheat

J Sun, M Okada, T Tameshige… - NAR Genomics and …, 2023 - academic.oup.com
Although allopolyploid species are common among natural and crop species, it is not easy
to distinguish duplicated genes, known as homeologs, during their genomic analysis. Yet …

[HTML][HTML] Gene and Transposable Element Expression Evolution Following Recent and Past Polyploidy Events in Spartina (Poaceae)

D Giraud, O Lima, M Rousseau-Gueutin… - Frontiers in …, 2021 - frontiersin.org
Gene expression dynamics is a key component of polyploid evolution, varying in nature,
intensity, and temporal scales, most particularly in allopolyploids, where two or more sub …

Genome‐wide DNA methylation dynamics following recent polyploidy in the allotetraploid Tragopogon miscellus (Asteraceae)

S Shan, MA Gitzendanner, JL Boatwright… - New …, 2024 - Wiley Online Library
Polyploidy is an important evolutionary force, yet epigenetic mechanisms, such as DNA
methylation, that regulate genome‐wide expression of duplicated genes remain largely …

Investigation of regulatory divergence between homoeologs in the recently formed allopolyploids, Tragopogon mirus and T. miscellus (Asteraceae)

MJ Yoo, J Koh, JL Boatwright, DE Soltis… - The Plant …, 2024 - Wiley Online Library
Polyploidy is an important evolutionary process throughout eukaryotes, particularly in
flowering plants. Duplicated gene pairs (homoeologs) in allopolyploids provide additional …

New cup out of old coffee: contribution of parental gene expression legacy to phenotypic novelty in coffee beans of the allopolyploid Coffea arabica L.

MC Combes, T Joët, AK Stavrinides… - Annals of …, 2023 - academic.oup.com
Abstract Background and Aims Allopolyploidization is a widespread phenomenon known to
generate novel phenotypes by merging evolutionarily distinct parental genomes and …