[HTML][HTML] AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Y Shahryary, A Symeonidi, RR Hazarika, J Denkena… - Genome Biology, 2020 - Springer
Stochastic changes in DNA methylation (ie, spontaneous epimutations) contribute to
methylome diversity in plants. Here, we describe AlphaBeta, a computational method for …

[HTML][HTML] Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales

C Lax, SJ Mondo, M Osorio-Concepción… - Nature …, 2024 - nature.com
Abstract DNA N6-adenine methylation (6mA) has recently gained importance as an
epigenetic modification in eukaryotes. Its function in lineages with high levels, such as early …

Mitotic inheritance of DNA methylation: more than just copy and paste

X Ming, B Zhu, Y Li - Journal of Genetics and Genomics, 2021 - Elsevier
Decades of investigation on DNA methylation have led to deeper insights into its metabolic
mechanisms and biological functions. This understanding was fueled by the recent …

[HTML][HTML] Comparative genomic and transcriptomic analyses of trans-kingdom pathogen Fusarium solani species complex reveal degrees of compartmentalization

DZ Hoh, HH Lee, N Wada, WA Liu, MR Lu, CK Lai… - BMC biology, 2022 - Springer
Abstract Background The Fusarium solani species complex (FSSC) comprises fungal
pathogens responsible for mortality in a diverse range of animals and plants, but their …

[HTML][HTML] The pattern and function of DNA methylation in fungal plant pathogens

C He, Z Zhang, B Li, S Tian - Microorganisms, 2020 - mdpi.com
To successfully infect plants and trigger disease, fungal plant pathogens use various
strategies that are dependent on characteristics of their biology and genomes. Although …

[HTML][HTML] Regulatory roles of epigenetic modifications in plant-phytopathogen interactions

Z Tao, F Yan, M Hahn, Z Ma - Crop Health, 2023 - Springer
As a sessile organism, plants have evolved a complex and sophisticated immune system to
defend against various pathogenic microbes effectively. However, microbes have also …

The impact of epigenetic information on genome evolution

SV Yi, MAD Goodisman - Philosophical Transactions of …, 2021 - royalsocietypublishing.org
Epigenetic information affects gene function by interacting with chromatin, while not
changing the DNA sequence itself. However, it has become apparent that the interactions …

[HTML][HTML] DNA N6-methyladenine modification in eukaryotic genome

H Li, N Zhang, Y Wang, S Xia, Y Zhu, C Xing… - Frontiers in …, 2022 - frontiersin.org
DNA methylation is treated as an important epigenetic mark in various biological activities. In
the past, a large number of articles focused on 5 mC while lacking attention to N6 …

Silent control: microbial plant pathogens evade host immunity without coding sequence changes

H Chen, S Raffaele, S Dong - FEMS Microbiology Reviews, 2021 - academic.oup.com
Both animals and plants have evolved a robust immune system to surveil and defeat
invading pathogenic microbes. Evasion of host immune surveillance is the key for …

Distinct roles of two DNA methyltransferases from Cryphonectria parasitica in fungal virulence, responses to hypovirus infection, and viral clearance

YH Ko, KK So, J Chun, DH Kim - MBio, 2021 - Am Soc Microbiol
Two DNA methyltransferase (DNMTase) genes from Cryphonectria parasitica have been
previously identified as CpDmt1 and CpDmt2, which are orthologous to rid and dim-2 of …