The multi-kingdom microbiome catalog of the chicken gastrointestinal tract
Y Wang, M Qu, Y Bi, WJ Liu, S Ma, B Wan, Y Hu… - Biosafety and …, 2024 - mednexus.org
Chicken is an important food animal worldwide and plays an important role in human life by
providing meat and eggs. Despite recent significant advances in gut microbiome studies, a …
providing meat and eggs. Despite recent significant advances in gut microbiome studies, a …
Biogeographic patterns and drivers of soil viromes
Viruses are crucial in shaping soil microbial functions and ecosystems. However, studies on
soil viromes have been limited in both spatial scale and biome coverage. Here we present a …
soil viromes have been limited in both spatial scale and biome coverage. Here we present a …
Manipulation and epigenetic control of silent biosynthetic pathways in actinobacteria
S Karimian, N Farahmandzad… - World Journal of …, 2024 - Springer
Most biosynthetic gene clusters (BGCs) of Actinobacteria are either silent or expressed less
than the detectable level. The non-genetic approaches including biological interactions …
than the detectable level. The non-genetic approaches including biological interactions …
Acidophilic partial nitrification (pH< 6) facilitates ultra-efficient short-flow nitrogen transformation: experimental validation and genomic insights
F Zhang, Z Du, J Wang, Y Du, Y Peng - Water Research, 2024 - Elsevier
Partial nitrification (PN) represents an energy-efficient bioprocess; however, it often
confronts challenges such as unstable nitrite accumulation, nitrite oxidizing bacteria shocks …
confronts challenges such as unstable nitrite accumulation, nitrite oxidizing bacteria shocks …
Unlocking partial nitrification by acidophilic microorganisms in ultra-low strength wastewater: Long-term investigation and genomic insights
F Zhang, Z Du, J Wang, Y Peng - Chemical Engineering Journal, 2024 - Elsevier
Achieving partial nitrification (PN) in low-strength wastewater is still a worldwide issue. In
this study, conversion from nitrification to PN was successfully achieved with a self-sustained …
this study, conversion from nitrification to PN was successfully achieved with a self-sustained …
Molecular mechanism for target RNA recognition and cleavage of Cas13h
F Chen, C Zhang, J Xue, F Wang, Z Li - Nucleic Acids Research, 2024 - academic.oup.com
Abstract RNA-targeting type VI CRISPR-Cas effectors are widely used in RNA applications.
Cas13h is a recently identified subtype of Cas13 ribonuclease, with strong RNA cleavage …
Cas13h is a recently identified subtype of Cas13 ribonuclease, with strong RNA cleavage …
[HTML][HTML] From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology
WE Anthony, SD Allison, CM Broderick… - Environmental …, 2024 - Springer
Soil microbiomes are heterogeneous, complex microbial communities. Metagenomic
analysis is generating vast amounts of data, creating immense challenges in sequence …
analysis is generating vast amounts of data, creating immense challenges in sequence …
[HTML][HTML] Unveiling the Microbial Realm with VEBA 2.0: A modular bioinformatics suite for end-to-end genome-resolved prokaryotic,(micro) eukaryotic, and viral multi …
JL Espinoza, A Phillips, MB Prentice, GS Tan… - bioRxiv, 2024 - ncbi.nlm.nih.gov
The microbiome is a complex community of microorganisms, encompassing prokaryotic
(bacterial and archaeal), eukaryotic, and viral entities. This microbial ensemble plays a …
(bacterial and archaeal), eukaryotic, and viral entities. This microbial ensemble plays a …
Microflora Danica: the atlas of Danish environmental microbiomes
CM Singleton, TBN Jensen, F Delogu, EA Sørensen… - bioRxiv, 2024 - biorxiv.org
The last 20 years have witnessed unprecedented advances in revealing the microbiomes
underpinning important processes in natural and human associated environments. Recent …
underpinning important processes in natural and human associated environments. Recent …
Logan: Planetary-Scale Genome Assembly Surveys Life's Diversity
The NCBI Sequence Read Archive (SRA) is the largest public repository of DNA sequencing
data, containing the most comprehensive snapshot of Earth's genetic diversity to date. As its …
data, containing the most comprehensive snapshot of Earth's genetic diversity to date. As its …