Naturally occurring modified ribonucleosides
PJ McCown, A Ruszkowska, CN Kunkler… - Wiley …, 2020 - Wiley Online Library
The chemical identity of RNA molecules beyond the four standard ribonucleosides has
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …
Dihydrouridine in the transcriptome: new life for this ancient RNA chemical modification
D Brégeon, L Pecqueur, S Toubdji, C Sudol… - ACS chemical …, 2022 - ACS Publications
Until recently, post-transcriptional modifications of RNA were largely restricted to noncoding
RNA species. However, this belief seems to have quickly dissipated with the growing …
RNA species. However, this belief seems to have quickly dissipated with the growing …
HIV-1 matrix-tRNA complex structure reveals basis for host control of Gag localization
C Bou-Nader, F Muecksch, JB Brown, JM Gordon… - Cell host & …, 2021 - cell.com
The HIV-1 virion structural polyprotein, Gag, is directed to particle assembly sites at the
plasma membrane by its N-terminal matrix (MA) domain. MA also binds to host tRNAs. To …
plasma membrane by its N-terminal matrix (MA) domain. MA also binds to host tRNAs. To …
Membraneless organelles restructured and built by pandemic viruses: HIV-1 and SARS-CoV-2
V Scoca, F Di Nunzio - Journal of molecular cell biology, 2021 - academic.oup.com
Viruses hijack host functions to invade their target cells and spread to new cells. Specifically,
viruses learned to usurp liquid‒liquid phase separation (LLPS), a newly exploited …
viruses learned to usurp liquid‒liquid phase separation (LLPS), a newly exploited …
The Dihydrouridine landscape from tRNA to mRNA: A perspective on synthesis, structural impact and function
O Finet, C Yague-Sanz, F Marchand, D Hermand - RNA biology, 2022 - Taylor & Francis
The universal dihydrouridine (D) epitranscriptomic mark results from a reduction of uridine
by the Dus family of NADPH-dependent reductases and is typically found within the eponym …
by the Dus family of NADPH-dependent reductases and is typically found within the eponym …
Structural basis of tRNA recognition by the widespread OB fold
A Umuhire Juru, R Ghirlando, J Zhang - Nature Communications, 2024 - nature.com
The widespread oligonucleotide/oligosaccharide-binding (OB)-fold recognizes diverse
substrates from sugars to nucleic acids and proteins, and plays key roles in genome …
substrates from sugars to nucleic acids and proteins, and plays key roles in genome …
The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity
HIV-1 reverse transcription initiates at the primer binding site (PBS) in the viral genomic RNA
(gRNA). Although the structure of the PBS-segment undergoes substantial rearrangement …
(gRNA). Although the structure of the PBS-segment undergoes substantial rearrangement …
[HTML][HTML] Genome-wide SNP analysis of Siamese cobra (Naja kaouthia) reveals the molecular basis of transitions between Z and W sex chromosomes and supports …
Elucidation of the process of sex chromosome differentiation is necessary to understand the
dynamics of evolutionary mechanisms in organisms. The W sex chromosome of the …
dynamics of evolutionary mechanisms in organisms. The W sex chromosome of the …
Sequence-and Structure-Specific tRNA Dihydrouridylation by hDUS2
J Ji, NJ Yu, RE Kleiner - ACS Central Science, 2024 - ACS Publications
The post-transcriptional reduction of uridine to dihydrouridine (D) by dihydrouridine
synthase (DUS) enzymes is among the most ubiquitous transformations in RNA biology. D is …
synthase (DUS) enzymes is among the most ubiquitous transformations in RNA biology. D is …
Zα Domain of ADAR1 Binds to an A-Form-like Nucleic Acid Duplex with Low Micromolar Affinity
The left-handed Z-conformation of nucleic acids can be adopted by both DNA and RNA
when bound by Zα domains found within a variety of viral and innate immune response …
when bound by Zα domains found within a variety of viral and innate immune response …