From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data

D Vella, I Zoppis, G Mauri, P Mauri… - EURASIP Journal on …, 2017 - Springer
The reductionist approach of dissecting biological systems into their constituents has been
successful in the first stage of the molecular biology to elucidate the chemical basis of …

Biological network approaches and applications in rare disease studies

P Zhang, Y Itan - Genes, 2019 - mdpi.com
Network biology has the capability to integrate, represent, interpret, and model complex
biological systems by collectively accommodating biological omics data, biological …

Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy

Y Bussi, R Kapon, Z Reich - PloS one, 2021 - journals.plos.org
Information theoretic approaches are ubiquitous and effective in a wide variety of
bioinformatics applications. In comparative genomics, alignment-free methods, based on …

The crosstalking immune cells network creates a collective function beyond the function of each cellular constituent during the progression of hepatocellular …

N Koelsch, F Mirshahi, HF Aqbi, M Saneshaw… - Scientific Reports, 2023 - nature.com
Abundance of data on the role of inflammatory immune responses in the progression or
inhibition of hepatocellular carcinoma (HCC) has failed to offer a curative immunotherapy for …

Information theory in computational biology: where we stand today

P Chanda, E Costa, J Hu, S Sukumar, J Van Hemert… - Entropy, 2020 - mdpi.com
“A Mathematical Theory of Communication” was published in 1948 by Claude Shannon to
address the problems in the field of data compression and communication over (noisy) …

Robustness and information transfer within IL-6-induced JAK/STAT signalling

U Billing, T Jetka, L Nortmann, N Wundrack… - Communications …, 2019 - nature.com
Cellular communication via intracellular signalling pathways is crucial. Expression and
activation of signalling proteins is heterogenous between isogenic cells of the same cell …

Inscribed matter communication: Part I

C Rose, IS Mian - … on Molecular, Biological and Multi-Scale …, 2016 - ieeexplore.ieee.org
We provide a fundamental treatment of the molecular communication channel wherein
“inscribed matter” is transmitted across a spatial gap to provide reliable signaling between a …

Identification of anticancer drug target genes using an outside competitive dynamics model on cancer signaling networks

TD Tran, DT Pham - Scientific Reports, 2021 - nature.com
Each cancer type has its own molecular signaling network. Analyzing the dynamics of
molecular signaling networks can provide useful information for identifying drug target …

An information transfer based novel framework for fault root cause tracing of complex electromechanical systems in the processing industry

R Wang, X Gao, J Gao, Z Gao, J Kang - Mechanical Systems and Signal …, 2018 - Elsevier
As one of the most important approaches for analyzing the mechanism of fault pervasion,
fault root cause tracing is a powerful and useful tool for detecting the fundamental causes of …

[HTML][HTML] Symmetry and symmetry breaking in cancer: a foundational approach to the cancer problem

JJ Frost, KJ Pienta, DS Coffey - Oncotarget, 2018 - ncbi.nlm.nih.gov
Symmetry and symmetry breaking concepts from physics and biology are applied to the
problem of cancer. Three categories of symmetry breaking in cancer are examined …