Combustion, chemistry, and carbon neutrality

K Kohse-Höinghaus - Chemical Reviews, 2023 - ACS Publications
Combustion is a reactive oxidation process that releases energy bound in chemical
compounds used as fuels─ energy that is needed for power generation, transportation …

A review of molecular representation in the age of machine learning

DS Wigh, JM Goodman… - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Research in chemistry increasingly requires interdisciplinary work prompted by, among
other things, advances in computing, machine learning, and artificial intelligence. Everyone …

[HTML][HTML] PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences

M Buttenschoen, GM Morris, CM Deane - Chemical Science, 2024 - pubs.rsc.org
The last few years have seen the development of numerous deep learning-based protein–
ligand docking methods. They offer huge promise in terms of speed and accuracy. However …

[HTML][HTML] SELFIES and the future of molecular string representations

M Krenn, Q Ai, S Barthel, N Carson, A Frei, NC Frey… - Patterns, 2022 - cell.com
Artificial intelligence (AI) and machine learning (ML) are expanding in popularity for broad
applications to challenging tasks in chemistry and materials science. Examples include the …

DrugMAP: molecular atlas and pharma-information of all drugs

F Li, J Yin, M Lu, M Mou, Z Li, Z Zeng, Y Tan… - Nucleic acids …, 2023 - academic.oup.com
The efficacy and safety of drugs are widely known to be determined by their interactions with
multiple molecules of pharmacological importance, and it is therefore essential to …

Exploration of ultralarge compound collections for drug discovery

WA Warr, MC Nicklaus, CA Nicolaou… - Journal of Chemical …, 2022 - ACS Publications
Designing new medicines more cheaply and quickly is tightly linked to the quest of exploring
chemical space more widely and efficiently. Chemical space is monumentally large, but …

[HTML][HTML] BioLiP2: an updated structure database for biologically relevant ligand–protein interactions

C Zhang, X Zhang, PL Freddolino… - Nucleic Acids …, 2024 - academic.oup.com
With the progress of structural biology, the Protein Data Bank (PDB) has witnessed rapid
accumulation of experimentally solved protein structures. Since many structures are …

From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability

S Seal, J Carreras-Puigvert, S Singh… - Molecular Biology of …, 2024 - Am Soc Cell Biol
Cell Painting assays generate morphological profiles that are versatile descriptors of
biological systems and have been used to predict in vitro and in vivo drug effects. However …

Artificial intelligence and cheminformatics tools: a contribution to the drug development and chemical science

I Saifi, BA Bhat, SS Hamdani, UY Bhat… - Journal of …, 2024 - Taylor & Francis
In the ever-evolving field of drug discovery, the integration of Artificial Intelligence (AI) and
Machine Learning (ML) with cheminformatics has proven to be a powerful combination …

[HTML][HTML] BIOPEP-UWM virtual—a novel database of food-derived peptides with in silico-predicted biological activity

P Minkiewicz, A Iwaniak, M Darewicz - Applied Sciences, 2022 - mdpi.com
The novel BIOPEP-UWM Virtual database is designed as a repository of peptide sequences
whose bioactivity or taste information was the result of in silico predictions. It is a tool …