In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants

TV Nguyen, CJ Vander Jagt, J Wang… - Genetics Selection …, 2023 - Springer
Studies have demonstrated that structural variants (SV) play a substantial role in the
evolution of species and have an impact on Mendelian traits in the genome. However, unlike …

Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response

A Picart-Picolo, S Grob, N Picault, M Franek… - Genome …, 2020 - genome.cshlp.org
Rapid plant genome evolution is crucial to adapt to environmental changes. Chromosomal
rearrangements and gene copy number variation (CNV) are two important tools for genome …

[HTML][HTML] The role of genomic structural variation in the genetic improvement of polyploid crops

SV Schiessl, E Katche, E Ihien, HS Chawla, AS Mason - The Crop Journal, 2019 - Elsevier
Many of our major crop species are polyploids, containing more than one genome or set of
chromosomes. Polyploid crops present unique challenges, including difficulties in genome …

Genetic variation and unintended risk in the context of old and new breeding techniques

SD Singer, JD Laurie, A Bilichak… - Critical Reviews in …, 2021 - Taylor & Francis
For thousands of years, humans have been improving crops to better suit their needs. These
enhancements are driven by changes in the genetic makeup of the plant. While this was …

Nonhomologous end joining as key to CRISPR/Cas-mediated plant chromosome engineering

F Gehrke, A Schindele, H Puchta - Plant Physiology, 2022 - academic.oup.com
Although clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-
associated protein (Cas)-mediated gene editing has revolutionized biology and plant …

Long‐read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plant

HS Chawla, HT Lee, I Gabur, P Vollrath… - Plant biotechnology …, 2021 - Wiley Online Library
Genome structural variation (SV) contributes strongly to trait variation in eukaryotic species
and may have an even higher functional significance than single‐nucleotide polymorphism …

High quality haplotype‐resolved genome assemblies of Populus tomentosa Carr., a stabilized interspecific hybrid species widespread in Asia

X An, K Gao, Z Chen, J Li, X Yang… - Molecular ecology …, 2022 - Wiley Online Library
Populus has a wide ecogeographical range spanning the Northern Hemisphere, and
interspecific hybrids are common. Populus tomentosa Carr. is widely distributed and …

High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii)

J Yu, AM Hulse-Kemp, E Babiker… - Horticulture …, 2021 - academic.oup.com
Abstract Vaccinium darrowii Camp (2n= 2x= 24) is a native North American blueberry
species and an important source of traits such as low chill requirement in commercial …

The story of a decade: genomics, functional genomics and molecular breeding in Brassica napus

J Gu, Z Guan, Y Jiao, K Liu, D Hong - Plant Communications, 2024 - cell.com
Rapeseed (Brassica napus L.) is one of the major global sources for edible vegetable oil
and is also utilized in feeding, pioneer crop, sightseeing and industrial purposes. With the …

CRISPR/Cas-mediated chromosome engineering: opening up a new avenue for plant breeding

M Rönspies, P Schindele… - Journal of Experimental …, 2021 - academic.oup.com
The advent of powerful site-specific nucleases, particularly the clustered regularly
interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas) system …