Chromosome identification in oil palm (Elaeis guineensis) using in situ hybridization with massive pools of single copy oligonucleotides and transferability across …

NM Zaki, T Schwarzacher, R Singh, M Madon… - Chromosome …, 2021 - Springer
Chromosome identification is essential for linking sequence and chromosomal maps,
verifying sequence assemblies, showing structural variations and tracking inheritance or …

Status and advances in mining for blackleg (Leptosphaeria maculans) quantitative resistance (QR) in oilseed rape (Brassica napus)

J Amas, R Anderson, D Edwards, W Cowling… - Theoretical and Applied …, 2021 - Springer
Key message Quantitative resistance (QR) loci discovered through genetic and genomic
analyses are abundant in the Brassica napus genome, providing an opportunity for their …

Structural chromosome variations from Jinmai 47 and Jinmai 84 affected agronomic traits and drought tolerance of wheat

S Zhang, J Zhao, H Zhang, D Fu, L Qiao, B Wu… - Journal of Integrative …, 2024 - Elsevier
Structural variation is an important source of genetic variation in wheat and have been
important in the evolution of the wheat's genome. Few studies have examined the …

Genome Diversity in Maize

D Pandita, S Parthasarathy, D Dhivyapriya… - … : Current Advances in …, 2023 - Springer
Since the beginning of recorded history, maize has been cultivated and evolved. Globally,
maize is among the three leading staple food grains. The domestication of maize is believed …

Breakdown of self-incompatibility of apple (Malus × domestica Borkh.) induced by gamma-ray mutagenesis

K Abe, S Moriya, S Nishio, K Okada, T Shimizu… - Tree Genetics & …, 2024 - Springer
Self-compatibility (SC) in a naturally self-incompatible fruit tree species is an incredibly
interesting trait for breeding objectives and a valuable tool to investigate the mechanism of …

Analysis of Complex Traits and Molecular Selection in Annual Crops

C Shen - Agronomy, 2024 - mdpi.com
Annual crops, which include staple crops like rice [1], wheat [2], maize [3], cotton [4], and
soybean [5], among others, have been extensively studied for their complex traits and the …

Zea mays RNA-seq estimated transcript abundances are strongly affected by read mapping bias

S Zhan, C Griswold, L Lukens - BMC genomics, 2021 - Springer
Background Genetic variation for gene expression is a source of phenotypic variation for
natural and agricultural species. The common approach to map and to quantify gene …

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

A Canaguier, R Guilbaud, E Denis, G Magdelenat… - BMC genomics, 2022 - Springer
Abstract Background Structural Variations (SVs) are genomic rearrangements derived from
duplication, deletion, insertion, inversion, and translocation events. In the past, SVs …

Comprehensive transcriptional variability analysis reveals gene networks regulating seed oil content of Brassica napus

Z Tan, Y Peng, Y Xiong, F Xiong, Y Zhang, N Guo, Z Tu… - Genome Biology, 2022 - Springer
Background Regulation of gene expression plays an essential role in controlling the
phenotypes of plants. Brassica napus (B. napus) is an important source for the vegetable oil …

Phenotypic Evaluation and Genetic Analysis of Seedling Emergence in a Global Collection of Wheat Genotypes (Triticum aestivum L.) Under Limited Water …

MG Francki, GS Stainer, E Walker… - Frontiers in Plant …, 2021 - frontiersin.org
The challenge in establishing an early-sown wheat crop in southern Australia is the need for
consistently high seedling emergence when sowing deep in subsoil moisture (> 10 cm) or …