Analysis of synonymous codon usage patterns in mitochondrial genomes of nine Amanita species

Q Li, Y Luo, A Sha, W Xiao, Z Xiong, X Chen… - Frontiers in …, 2023 - frontiersin.org
Introduction Codon basis is a common and complex natural phenomenon observed in many
kinds of organisms. Methods In the present study, we analyzed the base bias of 12 …

Comparative analysis of codon bias in the chloroplast genomes of theaceae species

Z Wang, Q Cai, Y Wang, M Li, C Wang, Z Wang… - Frontiers in …, 2022 - frontiersin.org
Theaceae species are dicotyledonous angiosperms with extremely high ornamental and
economic value. The chloroplast genome is traditionally used to study species evolution …

Chloroplast genomes of four Carex species: Long repetitive sequences trigger dramatic changes in chloroplast genome structure

S Xu, K Teng, H Zhang, K Gao, J Wu, L Duan… - Frontiers in Plant …, 2023 - frontiersin.org
The chloroplast genomes of angiosperms usually have a stable circular quadripartite
structure that exhibits high consistency in genome size and gene order. As one of the most …

Codon usage pattern and genetic diversity in chloroplast genomes of Panicum species

G Li, L Zhang, P Xue - Gene, 2021 - Elsevier
Exploring the molecular identities and the genetic diversity of a plant species is crucial in
figuring out the evolutionary pressure of genes as well as in molecular breeding application …

Intraspecific and interspecific variations in the synonymous codon usage in mitochondrial genomes of 8 pleurotus strains

W Gao, X Chen, J He, A Sha, Y Luo, W Xiao, Z Xiong… - BMC genomics, 2024 - Springer
In this study, we investigated the codon bias of twelve mitochondrial core protein coding
genes (PCGs) in eight Pleurotus strains, two of which are from the same species. The results …

Comparative analysis of codon usage patterns in chloroplast genomes of ten Epimedium species

Y Wang, D Jiang, K Guo, L Zhao, F Meng, J Xiao… - BMC genomic data, 2023 - Springer
Abstract Background The Phenomenon of codon usage bias exists in the genomes of
prokaryotes and eukaryotes. The codon usage pattern is affected by environmental factors …

Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes

P Wu, W Xiao, Y Luo, Z Xiong, X Chen, J He… - Frontiers in …, 2023 - frontiersin.org
Introduction Codon usage bias is a prevalent phenomenon observed across various species
and genes. However, the specific attributes of codon usage in the mitochondrial genome of …

Codon usage bias and genetic diversity in chloroplast genomes of Elaeagnus species (Myrtiflorae: Elaeagnaceae)

C Li, L Zhou, J Nie, S Wu, W Li, Y Liu, Y Liu - Physiology and Molecular …, 2023 - Springer
Codon usage bias (CUB) reveals the characteristics of species and can be utilized to
understand their evolutionary relationship, increase the target genes' expression in the …

Codon usage provide insights into the adaptation of rice genes under stress condition

S Tyagi, PG Kabade, N Gnanapragasam… - International Journal of …, 2023 - mdpi.com
Plants experience different stresses, ie, abiotic, or biotic, and to combat them, plants re-
program the expression of growth-, metabolism-, and resistance-related genes. These …

Analysis of codon usage bias of chloroplast genomes in Gynostemma species

P Zhang, W Xu, X Lu, L Wang - Physiology and Molecular Biology of Plants, 2021 - Springer
Gynostemma plants are important Chinese medicinal material and economic crops. Codon
usage analysis is a good way to understand organism evolution and phylogeny. There is no …