Harnessing the power of RADseq for ecological and evolutionary genomics
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …
Next‐generation sequencing technologies for environmental DNA research
S Shokralla, JL Spall, JF Gibson… - Molecular …, 2012 - Wiley Online Library
Since 2005, advances in next‐generation sequencing technologies have revolutionized
biological science. The analysis of environmental DNA through the use of specific gene …
biological science. The analysis of environmental DNA through the use of specific gene …
[HTML][HTML] Evolution of the germline mutation rate across vertebrates
LA Bergeron, S Besenbacher, J Zheng, P Li… - Nature, 2023 - nature.com
The germline mutation rate determines the pace of genome evolution and is an evolving
parameter itself. However, little is known about what determines its evolution, as most …
parameter itself. However, little is known about what determines its evolution, as most …
Dense sampling of bird diversity increases power of comparative genomics
Whole-genome sequencing projects are increasingly populating the tree of life and
characterizing biodiversity,,–. Sparse taxon sampling has previously been proposed to …
characterizing biodiversity,,–. Sparse taxon sampling has previously been proposed to …
A global catalog of whole-genome diversity from 233 primate species
The rich diversity of morphology and behavior displayed across primate species provides an
informative context in which to study the impact of genomic diversity on fundamental …
informative context in which to study the impact of genomic diversity on fundamental …
MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics
R Allio, A Schomaker‐Bastos… - Molecular ecology …, 2020 - Wiley Online Library
Thanks to the development of high‐throughput sequencing technologies, target enrichment
sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routine inference …
sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routine inference …
The evolution of a tropical biodiversity hotspot
The tropics are the source of most biodiversity yet inadequate sampling obscures answers to
fundamental questions about how this diversity evolves. We leveraged samples assembled …
fundamental questions about how this diversity evolves. We leveraged samples assembled …
DnaSP 6: DNA sequence polymorphism analysis of large data sets
J Rozas, A Ferrer-Mata… - Molecular biology …, 2017 - academic.oup.com
We present version 6 of the DNA Sequence Polymorphism (DnaSP) software, a new version
of the popular tool for performing exhaustive population genetic analyses on multiple …
of the popular tool for performing exhaustive population genetic analyses on multiple …
[HTML][HTML] Phylogenetic classification of bony fishes
Background Fish classifications, as those of most other taxonomic groups, are being
transformed drastically as new molecular phylogenies provide support for natural groups …
transformed drastically as new molecular phylogenies provide support for natural groups …
A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …