Metabolomics and complementary techniques to investigate the plant phytochemical cosmos

H Tsugawa, A Rai, K Saito, R Nakabayashi - Natural Product Reports, 2021 - pubs.rsc.org
Covering: up to 2021 Plants and their associated microbial communities are known to
produce millions of metabolites, a majority of which are still not characterized and are …

Plant metabolomics: from holistic data to relevant biomarkers

JL Wolfender, S Rudaz, Y Hae Choi… - Current medicinal …, 2013 - ingentaconnect.com
Metabolomics is playing an increasingly important role in plant science. It aims at the
comprehensive analysis of the plant metabolome which consists both of primary and …

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

R Caspi, T Altman, R Billington, K Dreher… - Nucleic acids …, 2014 - academic.oup.com
Abstract The MetaCyc database (MetaCyc. org) is a comprehensive and freely accessible
database describing metabolic pathways and enzymes from all domains of life. MetaCyc …

Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants

P Schläpfer, P Zhang, C Wang, T Kim, M Banf… - Plant …, 2017 - academic.oup.com
Plant metabolism underpins many traits of ecological and agronomic importance. Plants
produce numerous compounds to cope with their environments but the biosynthetic …

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants …

SMD Seaver, F Liu, Q Zhang, J Jeffryes… - Nucleic acids …, 2021 - academic.oup.com
For over 10 years, ModelSEED has been a primary resource for the construction of draft
genome-scale metabolic models based on annotated microbial or plant genomes. Now …

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

P Lamesch, TZ Berardini, D Li, D Swarbreck… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Arabidopsis Information Resource (TAIR, http://arabidopsis. org) is a genome
database for Arabidopsis thaliana, an important reference organism for many fundamental …

The genome evolution and domestication of tropical fruit mango

P Wang, Y Luo, J Huang, S Gao, G Zhu, Z Dang, J Gai… - Genome biology, 2020 - Springer
Background Mango is one of the world's most important tropical fruits. It belongs to the family
Anacardiaceae, which includes several other economically important species, notably …

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

R Caspi, T Altman, K Dreher, CA Fulcher… - Nucleic acids …, 2012 - academic.oup.com
Abstract The MetaCyc database (http://metacyc. org/) provides a comprehensive and freely
accessible resource for metabolic pathways and enzymes from all domains of life. The …

Genomic signatures of specialized metabolism in plants

L Chae, T Kim, R Nilo-Poyanco, SY Rhee - Science, 2014 - science.org
All plants synthesize basic metabolites needed for survival (primary metabolism), but
different taxa produce distinct metabolites that are specialized for specific environmental …

Identification of Cis-Acting Promoter Elements in Cold- and Dehydration-Induced Transcriptional Pathways in Arabidopsis, Rice, and Soybean

K Maruyama, D Todaka, J Mizoi, T Yoshida… - DNA …, 2012 - academic.oup.com
The genomes of three plants, Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), and
soybean (Glycine max), have been sequenced, and their many genes and promoters have …