ELM—the Eukaryotic Linear Motif resource—2024 update

M Kumar, S Michael, J Alvarado-Valverde… - Nucleic acids …, 2024 - academic.oup.com
Abstract Short Linear Motifs (SLiMs) are the smallest structural and functional components of
modular eukaryotic proteins. They are also the most abundant, especially when considering …

Co-opting the E3 ligase KLHDC2 for targeted protein degradation by small molecules

CM Hickey, KM Digianantonio… - Nature Structural & …, 2024 - nature.com
Targeted protein degradation (TPD) by PROTAC (proteolysis-targeting chimera) and
molecular glue small molecules is an emerging therapeutic strategy. To expand the roster of …

Cullin-RING ligases employ geometrically optimized catalytic partners for substrate targeting

J Li, N Purser, J Liwocha, DC Scott, HA Byers… - Molecular cell, 2024 - cell.com
Cullin-RING ligases (CRLs) ubiquitylate specific substrates selected from other cellular
proteins. Substrate discrimination and ubiquitin transferase activity were thought to be strictly …

Catalysis of non-canonical protein ubiquitylation by the ARIH1 ubiquitin ligase

N Purser, I Tripathi-Giesgen, J Li, DC Scott… - Biochemical …, 2023 - portlandpress.com
Protein ubiquitylation typically involves isopeptide bond formation between the C-terminus
of ubiquitin to the side-chain amino group on Lys residues. However, several ubiquitin …

The herpesvirus UL49. 5 protein hijacks a cellular C-degron pathway to drive TAP transporter degradation

M Wąchalska, C Riepe, MJ Ślusarz… - Proceedings of the …, 2024 - National Acad Sciences
The transporter associated with antigen processing (TAP) is a key player in the major
histocompatibility class I-restricted antigen presentation and an attractive target for immune …

Targeted kinase degradation via the KLHDC2 ubiquitin E3 ligase

Y Kim, P Seo, E Jeon, I You, K Hwang, N Kim, J Tse… - Cell Chemical …, 2023 - cell.com
Chemically induced protein degradation is a powerful strategy for perturbing cellular
biochemistry. The predominant mechanism of action for protein degrader drugs involves an …

Mechanism and evolutionary origins of alanine-tail C-degron recognition by E3 ligases Pirh2 and CRL2-KLHDC10

PR Patil, AM Burroughs, M Misra, F Cerullo, CC Insua… - Cell reports, 2023 - cell.com
In ribosome-associated quality control (RQC), nascent polypeptides produced by interrupted
translation are modified with C-terminal polyalanine tails (" Ala-tails") that function outside …

Molecular basis for C-degron recognition by CRL2APPBP2 ubiquitin ligase

S Zhao, D Olmayev-Yaakobov, W Ru… - Proceedings of the …, 2023 - National Acad Sciences
E3 ubiquitin ligases determine the specificity of eukaryotic protein degradation by selective
binding to destabilizing protein motifs, termed degrons, in substrates for ubiquitin-mediated …

Activity-based profiling of cullin–RING E3 networks by conformation-specific probes

LT Henneberg, J Singh, DM Duda, K Baek… - Nature Chemical …, 2023 - nature.com
The cullin–RING ubiquitin ligase (CRL) network comprises over 300 unique complexes that
switch from inactive to activated conformations upon site-specific cullin modification by the …

Friend or foe? Reciprocal regulation between E3 ubiquitin ligases and deubiquitinases

DL Bolhuis, MJ Emanuele… - Biochemical Society …, 2024 - portlandpress.com
Protein ubiquitination is a post-translational modification that entails the covalent attachment
of the small protein ubiquitin (Ub), which acts as a signal to direct protein stability …