Roles of mRNA poly (A) tails in regulation of eukaryotic gene expression
LA Passmore, J Coller - Nature Reviews Molecular Cell Biology, 2022 - nature.com
In eukaryotes, poly (A) tails are present on almost every mRNA. Early experiments led to the
hypothesis that poly (A) tails and the cytoplasmic polyadenylate-binding protein (PABPC) …
hypothesis that poly (A) tails and the cytoplasmic polyadenylate-binding protein (PABPC) …
Codon optimality, bias and usage in translation and mRNA decay
G Hanson, J Coller - Nature reviews Molecular cell biology, 2018 - nature.com
The advent of ribosome profiling and other tools to probe mRNA translation has revealed
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …
Engineered pegRNAs improve prime editing efficiency
JW Nelson, PB Randolph, SP Shen, KA Everette… - Nature …, 2022 - nature.com
Prime editing enables the installation of virtually any combination of point mutations, small
insertions or small deletions in the DNA of living cells. A prime editing guide RNA (pegRNA) …
insertions or small deletions in the DNA of living cells. A prime editing guide RNA (pegRNA) …
Alternative polyadenylation of mRNA precursors
Alternative polyadenylation (APA) is an RNA-processing mechanism that generates distinct
3′ termini on mRNAs and other RNA polymerase II transcripts. It is widespread across all …
3′ termini on mRNAs and other RNA polymerase II transcripts. It is widespread across all …
[HTML][HTML] Codon optimality is a major determinant of mRNA stability
Summary mRNA degradation represents a critical regulated step in gene expression.
Although the major pathways in turnover have been identified, accounting for disparate half …
Although the major pathways in turnover have been identified, accounting for disparate half …
Single-cell RNA-seq: advances and future challenges
AE Saliba, AJ Westermann, SA Gorski… - Nucleic acids …, 2014 - academic.oup.com
Phenotypically identical cells can dramatically vary with respect to behavior during their
lifespan and this variation is reflected in their molecular composition such as the …
lifespan and this variation is reflected in their molecular composition such as the …
Translation affects mRNA stability in a codon-dependent manner in human cells
mRNA translation decodes nucleotide into amino acid sequences. However, translation has
also been shown to affect mRNA stability depending on codon composition in model …
also been shown to affect mRNA stability depending on codon composition in model …
Unification of protein abundance datasets yields a quantitative Saccharomyces cerevisiae proteome
B Ho, A Baryshnikova, GW Brown - Cell systems, 2018 - cell.com
Protein activity is the ultimate arbiter of function in most cellular pathways, and protein
concentration is fundamentally connected to protein action. While the proteome of yeast has …
concentration is fundamentally connected to protein action. While the proteome of yeast has …
RNA modifications and structures cooperate to guide RNA–protein interactions
CJT Lewis, T Pan, A Kalsotra - Nature reviews Molecular cell biology, 2017 - nature.com
An emerging body of evidence indicates that post-transcriptional gene regulation relies not
only on the sequence of mRNAs but also on their folding into intricate secondary structures …
only on the sequence of mRNAs but also on their folding into intricate secondary structures …
Evolution and biological roles of alternative 3′ UTRs
C Mayr - Trends in cell biology, 2016 - cell.com
More than half of human genes use alternative cleavage and polyadenylation to generate
alternative 3′ untranslated region (3′ UTR) isoforms. Most efforts have focused on …
alternative 3′ untranslated region (3′ UTR) isoforms. Most efforts have focused on …