Global HIV‐1 transmitted drug resistance in the INSIGHT S trategic T iming of A nti R etroviral T reatment (START) trial

JD Baxter, D Dunn, E White, S Sharma… - HIV …, 2015 - Wiley Online Library
Objectives HIV‐1 transmitted drug resistance (TDR) in treatment‐naïve individuals is a well‐
described phenomenon. Baseline genotypic resistance testing is considered standard of …

Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation …

RM Gibson, AM Meyer, D Winner, J Archer… - Antimicrobial agents …, 2014 - Am Soc Microbiol
With 29 individual antiretroviral drugs available from six classes that are approved for the
treatment of HIV-1 infection, a combination of different phenotypic and genotypic tests is …

Detection of minority resistance during early HIV-1 infection: natural variation and spurious detection rather than transmission and evolution of multiple viral variants

S Gianella, W Delport, ME Pacold, JA Young… - Journal of …, 2011 - Am Soc Microbiol
Reports of a high frequency of the transmission of minority viral populations with drug-
resistant mutations (DRM) are inconsistent with evidence that HIV-1 infections usually arise …

Clinical implications of HIV-1 minority variants

JZ Li, DR Kuritzkes - Clinical infectious diseases, 2013 - academic.oup.com
Technologic advances in human immunodeficiency virus type 1 (HIV-1) sequencing have
revolutionized the study of antiretroviral drug resistance and are increasingly moving from …

Minority variants associated with transmitted and acquired HIV-1 nonnucleoside reverse transcriptase inhibitor resistance: implications for the use of second …

V Varghese, R Shahriar, SY Rhee, T Liu… - JAIDS Journal of …, 2009 - journals.lww.com
Objectives: K103N, the most common nonnucleoside reverse transcriptase inhibitor (NNRTI)-
resistant mutation in patients with transmitted resistance and in patients receiving a failing …

HIV drug resistance testing by high-multiplex “wide” sequencing on the MiSeq instrument

HR Lapointe, W Dong, GQ Lee… - Antimicrobial agents …, 2015 - Am Soc Microbiol
Limited access to HIV drug resistance testing in low-and middle-income countries impedes
clinical decision-making at the individual patient level. An efficient protocol to address this …

[HTML][HTML] Quasispecies analyses of the HIV-1 near-full-length genome with Illumina MiSeq

H Ode, M Matsuda, K Matsuoka, A Hachiya… - Frontiers in …, 2015 - frontiersin.org
Human immunodeficiency virus type-1 (HIV-1) exhibits high between-host genetic diversity
and within-host heterogeneity, recognized as quasispecies. Because HIV-1 quasispecies …

[HTML][HTML] Are we ready for NGS HIV drug resistance testing? The second “winnipeg consensus” symposium

H Ji, P Sandstrom, R Paredes, PR Harrigan… - Viruses, 2020 - mdpi.com
HIV drug resistance is a major global challenge to successful and sustainable antiretroviral
therapy. Next-generation sequencing (NGS)-based HIV drug resistance (HIVDR) assays …

[HTML][HTML] A MiSeq-HyDRA platform for enhanced HIV drug resistance genotyping and surveillance

T Taylor, ER Lee, M Nykoluk, E Enns, B Liang… - Scientific Reports, 2019 - nature.com
Conventional HIV drug resistance (HIVDR) genotyping utilizes Sanger sequencing (SS)
methods, which are limited by low data throughput and the inability of detecting low …

Deep sequencing for HIV-1 clinical management

M Casadellà, R Paredes - Virus research, 2017 - Elsevier
The emerging HIV-1 resistance epidemic is threatening the impressive global advances in
HIV-1 infection treatment and prevention achieved in the last decade. Next-generation …