Machine learning approaches and databases for prediction of drug–target interaction: a survey paper
The task of predicting the interactions between drugs and targets plays a key role in the
process of drug discovery. There is a need to develop novel and efficient prediction …
process of drug discovery. There is a need to develop novel and efficient prediction …
Target identification and mechanism of action in chemical biology and drug discovery
M Schenone, V Dančík, BK Wagner… - Nature chemical …, 2013 - nature.com
Target-identification and mechanism-of-action studies have important roles in small-
molecule probe and drug discovery. Biological and technological advances have resulted in …
molecule probe and drug discovery. Biological and technological advances have resulted in …
Protgnn: Towards self-explaining graph neural networks
Despite the recent progress in Graph Neural Networks (GNNs), it remains challenging to
explain the predictions made by GNNs. Existing explanation methods mainly focus on post …
explain the predictions made by GNNs. Existing explanation methods mainly focus on post …
[HTML][HTML] DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences
Identification of drug-target interactions (DTIs) plays a key role in drug discovery. The high
cost and labor-intensive nature of in vitro and in vivo experiments have highlighted the …
cost and labor-intensive nature of in vitro and in vivo experiments have highlighted the …
Computational prediction of drug–target interactions using chemogenomic approaches: an empirical survey
Computational prediction of drug–target interactions (DTIs) has become an essential task in
the drug discovery process. It narrows down the search space for interactions by suggesting …
the drug discovery process. It narrows down the search space for interactions by suggesting …
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …
methods and in rational drug design, the increase in approved drugs in the past decade did …
[HTML][HTML] Prediction of drug-target interactions and drug repositioning via network-based inference
Drug-target interaction (DTI) is the basis of drug discovery and design. It is time consuming
and costly to determine DTI experimentally. Hence, it is necessary to develop computational …
and costly to determine DTI experimentally. Hence, it is necessary to develop computational …
[HTML][HTML] ChemDes: an integrated web-based platform for molecular descriptor and fingerprint computation
Background Molecular descriptors and fingerprints have been routinely used in QSAR/SAR
analysis, virtual drug screening, compound search/ranking, drug ADME/T prediction and …
analysis, virtual drug screening, compound search/ranking, drug ADME/T prediction and …
Some remarks on protein attribute prediction and pseudo amino acid composition
KC Chou - Journal of theoretical biology, 2011 - Elsevier
With the accomplishment of human genome sequencing, the number of sequence-known
proteins has increased explosively. In contrast, the pace is much slower in determining their …
proteins has increased explosively. In contrast, the pace is much slower in determining their …
TargetNet: a web service for predicting potential drug–target interaction profiling via multi-target SAR models
Drug–target interactions (DTIs) are central to current drug discovery processes and public
health fields. Analyzing the DTI profiling of the drugs helps to infer drug indications, adverse …
health fields. Analyzing the DTI profiling of the drugs helps to infer drug indications, adverse …