Genomic selection in plant breeding: Key factors shaping two decades of progress

A Alemu, J Åstrand, OA Montesinos-Lopez… - Molecular Plant, 2024 - cell.com
Genomic selection, the application of genomic prediction (GP) models to select candidate
individuals, has significantly advanced in the past two decades, effectively accelerating …

Boosting grapevine breeding for climate-smart viticulture: from genetic resources to predictive genomics

G Magon, V De Rosa, M Martina, R Falchi… - Frontiers in Plant …, 2023 - frontiersin.org
The multifaceted nature of climate change is increasing the urgency to select resilient
grapevine varieties, or generate new, fitter cultivars, to withstand a multitude of new …

GWAS-assisted genomic prediction of cadmium accumulation in maize kernel with machine learning and linear statistical methods

H Yan, H Guo, W Xu, C Dai, W Kimani, J Xie… - Journal of Hazardous …, 2023 - Elsevier
The production and use of many heavy meal contained materials almost inevitably release
cadmium (Cd) into environment, generating Cd pollutants with adverse impacts on food and …

Multi-trait and multi-environment genomic prediction for flowering traits in maize: a deep learning approach

F Mora-Poblete, C Maldonado, L Henrique… - Frontiers in Plant …, 2023 - frontiersin.org
Maize (Zea mays L.), the third most widely cultivated cereal crop in the world, plays a critical
role in global food security. To improve the efficiency of selecting superior genotypes in …

Genome-wide genotyping data renew knowledge on genetic diversity of a worldwide alfalfa collection and give insights on genetic control of phenology traits

M Pégard, P Barre, S Delaunay, F Surault… - Frontiers in Plant …, 2023 - frontiersin.org
China's and Europe's dependence on imported protein is a threat to the food self-sufficiency
of these regions. It could be solved by growing more legumes, including alfalfa that is the …

GWAS and genomic prediction for pre-harvest sprouting tolerance involving sprouting score and two other related traits in spring wheat

M Kumar, S Kumar, KS Sandhu, N Kumar, G Saripalli… - Molecular …, 2023 - Springer
In wheat, a genome-wide association study (GWAS) and genomic prediction (GP) analysis
were conducted for pre-harvest sprouting (PHS) tolerance and two of its related traits. For …

Genomic selection performs as effectively as phenotypic selection for increasing seed yield in soybean

NB Bandillo, D Jarquin, LG Posadas… - The Plant …, 2023 - Wiley Online Library
Increasing the rate of genetic gain for seed yield remains the primary breeding objective in
both public and private soybean [Glycine max (L.) Merr.] breeding programs. Genomic …

Transposable element polymorphisms improve prediction of complex agronomic traits in rice

IT Vourlaki, R Castanera, SE Ramos-Onsins… - Theoretical and Applied …, 2022 - Springer
Key message Transposon insertion polymorphisms can improve prediction of complex
agronomic traits in rice compared to using SNPs only, especially when accessions to be …

Evaluation of strategies to optimize training populations for genomic prediction in oat (Avena sativa)

ES Sørensen, C Jansen, S Windju, J Crossa… - Plant …, 2023 - Wiley Online Library
Genomic selection is a promising breeding methodology that could increase selection
accuracy and intensity and reduce generation interval. As the cost of genotyping decreases …

Genome‐wide marker effect heterogeneity is associated with a large effect dormancy locus in winter malting barley

TE Rooney, KH Kunze, ME Sorrells - The Plant Genome, 2022 - Wiley Online Library
Prediction of trait values in plant breeding populations typically relies on assumptions about
marker effect homogeneity across populations. Evidence is presented for winter malting …