Genome editing for plant research and crop improvement

X Zhan, Y Lu, JK Zhu, JR Botella - Journal of Integrative Plant …, 2021 - Wiley Online Library
The advent of clustered regularly interspaced short palindromic repeat (CRISPR) has had a
profound impact on plant biology, and crop improvement. In this review, we summarize the …

[HTML][HTML] Prime editing with genuine Cas9 nickases minimizes unwanted indels

J Lee, K Lim, A Kim, YG Mok, E Chung, SI Cho… - Nature …, 2023 - nature.com
Unlike CRISPR-Cas9 nucleases, which yield DNA double-strand breaks (DSBs), Cas9
nickases (nCas9s), which are created by replacing key catalytic amino-acid residues in one …

[HTML][HTML] An AsCas12f-based compact genome-editing tool derived by deep mutational scanning and structural analysis

T Hino, SN Omura, R Nakagawa, T Togashi… - Cell, 2023 - cell.com
SpCas9 and AsCas12a are widely utilized as genome-editing tools in human cells.
However, their relatively large size poses a limitation for delivery by cargo-size-limited …

CRISPR-Cas-based engineering of probiotics

L Liu, SE Helal, N Peng - BioDesign Research, 2023 - spj.science.org
Probiotics are the treasure of the microbiology fields. They have been widely used in the
food industry, clinical treatment, and other fields. The equivocal health-promoting effects and …

Detect-seq reveals out-of-protospacer editing and target-strand editing by cytosine base editors

Z Lei, H Meng, Z Lv, M Liu, H Zhao, H Wu, X Zhang… - Nature …, 2021 - nature.com
Cytosine base editors (CBEs) have the potential to correct human pathogenic point
mutations. However, their genome-wide specificity remains poorly understood. Here we …

A pathway independent multi-modular ordered control system based on thermosensors and CRISPRi improves bioproduction in Bacillus subtilis

W Yu, K Jin, Y Wu, Q Zhang, Y Liu, J Li… - Nucleic Acids …, 2022 - academic.oup.com
Dynamic regulation is an effective strategy for control of gene expression in microbial cell
factories. In some pathway contexts, several metabolic modules must be controlled in a time …

[HTML][HTML] Multiplexed base editing through Cas12a variant-mediated cytosine and adenine base editors

F Chen, M Lian, B Ma, S Gou, X Luo, K Yang… - Communications …, 2022 - nature.com
Cas12a can process multiple sgRNAs from a single transcript of CRISPR array, conferring
advantages in multiplexed base editing when incorporated into base editor systems, which …

Chemical and biological approaches to interrogate off-target effects of genome editing tools

Z Lei, H Meng, Y Zhuang, Q Zhu, C Yi - ACS Chemical Biology, 2023 - ACS Publications
Various genome editing tools have been developed for programmable genome
manipulation at specified genomic loci. However, it is crucial to comprehensively interrogate …

[HTML][HTML] Engineered Cas12a-Plus nuclease enables gene editing with enhanced activity and specificity

H Huang, G Huang, Z Tan, Y Hu, L Shan, J Zhou… - BMC biology, 2022 - Springer
Abstract Background The CRISPR-Cas12a (formerly Cpf1) system is a versatile gene-
editing tool with properties distinct from the broadly used Cas9 system. Features such as …

Mg2+-dependent conformational rearrangements of CRISPR-Cas12a R-loop complex are mandatory for complete double-stranded DNA cleavage

H Son, J Park, I Hwang, Y Jung… - Proceedings of the …, 2021 - National Acad Sciences
CRISPR-Cas12a, an RNA-guided DNA targeting endonuclease, has been widely used for
genome editing and nucleic acid detection. As part of the essential processes for both of …