[HTML][HTML] Codon usage bias

ST Parvathy, V Udayasuriyan, V Bhadana - Molecular biology reports, 2022 - Springer
Codon usage bias is the preferential or non-random use of synonymous codons, a
ubiquitous phenomenon observed in bacteria, plants and animals. Different species have …

[HTML][HTML] Comparative analysis of codon bias in the chloroplast genomes of theaceae species

Z Wang, Q Cai, Y Wang, M Li, C Wang, Z Wang… - Frontiers in …, 2022 - frontiersin.org
Theaceae species are dicotyledonous angiosperms with extremely high ornamental and
economic value. The chloroplast genome is traditionally used to study species evolution …

[HTML][HTML] Comparative chloroplast genomics of 34 species in subtribe Swertiinae (Gentianaceae) with implications for its phylogeny

L Yang, S Deng, Y Zhu, Q Da - BMC Plant Biology, 2023 - Springer
Abstract Background Subtribe Swertiinae, a medicinally significant and highly speciose
Subtribe of family Gentianaceae. Despite previous extensive studies based on both …

[HTML][HTML] Codon usage patterns across seven Rosales species

Y Zhang, Z Shen, X Meng, L Zhang, Z Liu, M Liu… - BMC Plant …, 2022 - Springer
Background Codon usage bias (CUB) analysis is an effective method for studying specificity,
evolutionary relationships, and mRNA translation and discovering new genes among …

Genome-wide characterization of bZIP transcription factors and their expression patterns in response to drought and salinity stress in Jatropha curcas

Z Wang, J Zhu, W Yuan, Y Wang, P Hu, C Jiao… - International Journal of …, 2021 - Elsevier
The basic leucine zipper (bZIP) family is one of the largest families of transcription factors
(TFs) in plants and is responsible for various functions, including regulating development …

[HTML][HTML] Comparative analysis of codon usage patterns in chloroplast genomes of five Miscanthus species and related species

J Sheng, X She, X Liu, J Wang, Z Hu - PeerJ, 2021 - peerj.com
Miscanthus is not only a perennial fiber biomass crop, but also valuable breeding resource
for its low-nutrient requirements, photosynthetic efficiency and strong adaptability to …

[HTML][HTML] Comprehensive Analysis of Codon Usage in Quercus Chloroplast Genome and Focus on psbA Gene

SL Shi, YQ Liu, RX Xia, L Qin - Genes, 2022 - mdpi.com
Quercus (oak) is an important economic and ecological tree species in the world, and it is
the necessary feed for oak silkworm feeding. Chloroplasts play an important role in green …

[HTML][HTML] Comparative and phylogenetic analysis of the complete chloroplast genomes of Uncaria (Rubiaceae) species

J Dai, Q Liu, X Xu, Z Tan, Y Lin, X Gao… - Frontiers in Plant …, 2023 - frontiersin.org
The genus Uncaria is famous for its high medicinal value. However, the high morphological
similarities and unclear interspecific genetic relationships have posed challenges to the …

Codon usage bias and genetic diversity in chloroplast genomes of Elaeagnus species (Myrtiflorae: Elaeagnaceae)

C Li, L Zhou, J Nie, S Wu, W Li, Y Liu, Y Liu - Physiology and Molecular …, 2023 - Springer
Codon usage bias (CUB) reveals the characteristics of species and can be utilized to
understand their evolutionary relationship, increase the target genes' expression in the …

[HTML][HTML] Comparative analysis of codon usage patterns in chloroplast genomes of ten Epimedium species

Y Wang, D Jiang, K Guo, L Zhao, F Meng, J Xiao… - BMC genomic data, 2023 - Springer
Abstract Background The Phenomenon of codon usage bias exists in the genomes of
prokaryotes and eukaryotes. The codon usage pattern is affected by environmental factors …