Analysis of codon usage bias of chloroplast genomes in Gynostemma species

P Zhang, W Xu, X Lu, L Wang - Physiology and Molecular Biology of Plants, 2021 - Springer
Gynostemma plants are important Chinese medicinal material and economic crops. Codon
usage analysis is a good way to understand organism evolution and phylogeny. There is no …

Molecular characterizations of genes in chloroplast genomes of the genus Arachis L. (Fabaceae) based on the codon usage divergence

S Yang, G Li, H Li - Plos one, 2023 - journals.plos.org
Studies on the molecular characteristics of chloroplast genome are generally important for
clarifying the evolutionary processes of plant species. The base composition, the effective …

[PDF][PDF] Genome-wide analysis of codon usage in sesame (Sesamum indicum L.)

M Andargie, Z Congyi - Heliyon, 2022 - cell.com
Sesamum indicum is an ancient oil crop grown in tropical and subtropical areas of the world.
We have analyzed 23,538 coding sequences (CDS) of S. indicum to understand the factors …

Codon usage bias in chloroplast genes implicate adaptive evolution of four ginger species

Q Yang, C Xin, QS Xiao, YT Lin, L Li… - Frontiers in Plant …, 2023 - frontiersin.org
Codon usage bias (CUB) refers to different codons exhibiting varying frequencies of usage
in the genome. Studying CUB is crucial for understanding genome structure, function, and …

[HTML][HTML] The complete chloroplast genome of Hibiscus syriacus using long-read sequencing: comparative analysis to examine the evolution of the tribe Hibisceae

H Koo, AY Shin, S Hong, YM Kim - Frontiers in Plant Science, 2023 - frontiersin.org
Hibiscus syriacus, a member of the tribe Hibisceae, is considered an important ornamental
and medicinal plant in east Asian countries. Here, we sequenced and assembled the …

An analysis of codon utilization patterns in the chloroplast genomes of three species of Coffea

Y Li, X Hu, M Xiao, J Huang, Y Lou, F Hu, X Fu, Y Li… - BMC Genomic …, 2023 - Springer
Background The chloroplast genome of plants is known for its small size and low mutation
and recombination rates, making it a valuable tool in plant phylogeny, molecular evolution …

The chloroplast genome of Farsetia hamiltonii Royle, phylogenetic analysis, and comparative study with other members of Clade C of Brassicaceae

N Javaid, M Ramzan, IA Khan, TA Alahmadi, R Datta… - BMC Plant …, 2022 - Springer
Abstract Background Farsetia hamiltonii Royle is a medicinally important annual plant from
the Cholistan desert that belongs to the tribe Anastaticeae and clade C of the Brassicaceae …

Complete chloroplast genome molecular structure, comparative and phylogenetic analyses of Sphaeropteris lepifera of Cyatheaceae family: a tree fern from China

Q Hu, R Qian, Y Zhang, X Ma, Y Ye, X Zhang, L Lin… - Scientific Reports, 2023 - nature.com
Sphaeropteris lepifera is a tree fern in the Cyatheaceae, a family that has played an
important role in the evolution of plant systems. This study aimed to analyze the complete …

Characterization of the complete chloroplast genome of Wolffia arrhiza and comparative genomic analysis with relative Wolffia species

H Park, JH Park, YJ Kang - Scientific Reports, 2024 - nature.com
Lemnoideae, commonly referred to as the duckweed, are aquatic plants found worldwide.
Wolffia species are known for their extreme reduction in size and complexity, lacking both …

Chloroplast genome analysis and evolutionary insights in the versatile medicinal plant Calendula officinalis L.

N Zhang, K Huang, P Xie, A Deng, X Tang, M Jiang… - Scientific Reports, 2024 - nature.com
Calendula officinalis L. is a versatile medicinal plant with numerous applications in various
fields. However, its chloroplast genome structure, features, phylogeny, and patterns of …