[HTML][HTML] Analysis of chloroplast genome structure and phylogeny of the traditional medicinal of Ardisia crispa (Myrsinaceae)

J Ye, Q Luo, Y Lang, N Ding, Y Jian, Z Wu, S Wei… - Scientific Reports, 2024 - nature.com
Ardisia crispa (Myrsinaceae) is an ethnomedicine with horticultural and important medicinal
values. Its morphology is complex, and its identification is difficult. We analyse the …

[HTML][HTML] Analysis of Codon Usage Patterns of Six Sequenced Brachypodium distachyon Lines Reveals a Declining CG Skew of the CDSs from the 5′-ends to the 3 …

J Wang, Y Lin, M Xi - Genes, 2021 - mdpi.com
Brachypodium distachyon, a new monocotyledonous model plant, has received wide
attention in biological research due to its small genome and numerous genetic resources …

[HTML][HTML] Molecular characterizations of genes in chloroplast genomes of the genus Arachis L. (Fabaceae) based on the codon usage divergence

S Yang, G Li, H Li - Plos one, 2023 - journals.plos.org
Studies on the molecular characteristics of chloroplast genome are generally important for
clarifying the evolutionary processes of plant species. The base composition, the effective …

[HTML][HTML] Plastome evolution of Engelhardia facilitates phylogeny of Juglandaceae

Y Huang, XJ Jin, CY Zhang, P Li, HH Meng… - BMC Plant Biology, 2024 - Springer
Abstract Background Engelhardia (Juglandaceae) is a genus of significant ecological and
economic importance, prevalent in the tropics and subtropics of East Asia. Although …

[HTML][HTML] The chloroplast genome of Chrozophora sabulosa Kar. & Kir. and its exploration in the evolutionary position uncertainty of genus Chrozophora

N Javaid, M Ramzan, S Jabeen, Y Du, M Anwar… - BMC genomics, 2024 - Springer
Abstract Chrozophora sabulosa Kar. & Kir. is a biennial herbaceous plant that belongs to the
Euphorbiaceae family and has medicinal properties. This research aimed to identify the …

[HTML][HTML] Chloroplast gene expression level is negatively correlated with evolutionary rates and selective pressure while positively with codon usage bias in …

J Hao, Y Liang, J Ping, J Li, W Shi, Y Su, T Wang - BMC Plant Biology, 2022 - Springer
Background Characterization of the key factors determining gene expression level has been
of significant interest. Previous studies on the relationship among evolutionary rates, codon …

[HTML][HTML] Analysis of codon usage patterns in 48 Aconitum species

M Yang, J Liu, W Yang, Z Li, Y Hai, B Duan, H Zhang… - BMC genomics, 2023 - Springer
Abstract Background The Aconitum genus is a crucial member of the Ranunculaceae family.
There are 350 Aconitum species worldwide, with about 170 species found in China. These …

Analysis of Codon Usage Bias in the chloroplast genome of Helianthus annuus J-01

SY Chen, H Zhang, X Wang, YH Zhang… - … Series: Earth and …, 2021 - iopscience.iop.org
In order to determine the usage of the codon against Helianthus annuus chloroplast
genome, this study used Codon W 1.4. 2 and online software CUSP to perform neutral …

[HTML][HTML] Comparative analysis of codon usage patterns in chloroplast genomes of cherries

YF Song, QH Yang, XG Yi, ZQ Zhu, XR Wang, M Li - Forests, 2022 - mdpi.com
Synonymous codon usage bias (SCUB) analysis is an effective method to explore species
specificity, evolutionary relationships and mRNA translation, as well as to discover novel …

[HTML][HTML] Fitness difference between two synonymous mutations of Phytophthora infestansATP6 gene

O Nkurikiyimfura, A Waheed, H Fang, X Yuan… - BMC Ecology and …, 2024 - Springer
Background Sequence variation produced by mutation provides the ultimate source of
natural selection for species adaptation. Unlike nonsynonymous mutation, synonymous …