[PDF][PDF] Single-molecule nanoscopy elucidates RNA polymerase II transcription at single genes in live cells

J Li, A Dong, K Saydaminova, H Chang, G Wang… - Cell, 2019 - cell.com
Transforming the vast knowledge from genetics, biochemistry, and structural biology into
detailed molecular descriptions of biological processes inside cells remains a major …

RNA polymerase II–associated factor 1 regulates the release and phosphorylation of paused RNA polymerase II

M Yu, W Yang, T Ni, Z Tang, T Nakadai, J Zhu… - Science, 2015 - science.org
Release of promoter-proximal paused RNA polymerase II (Pol II) during early elongation is a
critical step in transcriptional regulation in metazoan cells. Paused Pol II release is thought …

Pre-mRNA splicing and its cotranscriptional connections

H Shenasa, DL Bentley - Trends in Genetics, 2023 - cell.com
Transcription of eukaryotic genes by RNA polymerase II (Pol II) yields RNA precursors
containing introns that must be spliced out and the flanking exons ligated together. Splicing …

Transcription dynamics in living cells

TL Lenstra, J Rodriguez, H Chen… - Annual review of …, 2016 - annualreviews.org
The transcription cycle can be roughly divided into three stages: initiation, elongation, and
termination. Understanding the molecular events that regulate all these stages requires a …

CDK12 globally stimulates RNA polymerase II transcription elongation and carboxyl-terminal domain phosphorylation

M Tellier, J Zaborowska, L Caizzi… - Nucleic acids …, 2020 - academic.oup.com
Abstract Cyclin-dependent kinase 12 (CDK12) phosphorylates the carboxyl-terminal domain
(CTD) of RNA polymerase II (pol II) but its roles in transcription beyond the expression of …

[PDF][PDF] SETD5 regulates chromatin methylation state and preserves global transcriptional fidelity during brain development and neuronal wiring

A Sessa, L Fagnocchi, G Mastrototaro, L Massimino… - Neuron, 2019 - cell.com
Mutations in one SETD5 allele are genetic causes of intellectual disability and autistic
spectrum disorders. However, the mechanisms by which SETD5 regulates brain …

[PDF][PDF] Fast-acting chemical tools to delineate causality in transcriptional control

MG Jaeger, GE Winter - Molecular cell, 2021 - cell.com
Multi-dimensional omics profiling continues to illuminate the complexity of cellular
processes. Because of difficult mechanistic interpretation of phenotypes induced by slow …

[PDF][PDF] Pausing of RNA polymerase II regulates mammalian developmental potential through control of signaling networks

LH Williams, G Fromm, NG Gokey, T Henriques… - Molecular cell, 2015 - cell.com
The remarkable capacity for pluripotency and self-renewal in embryonic stem cells (ESCs)
requires a finely tuned transcriptional circuitry wherein the pathways and genes that initiate …

[PDF][PDF] Transcriptional burst initiation and polymerase pause release are key control points of transcriptional regulation

CR Bartman, N Hamagami, CA Keller, B Giardine… - Molecular cell, 2019 - cell.com
Transcriptional regulation occurs via changes to rates of different biochemical steps of
transcription, but it remains unclear which rates are subject to change upon biological …

[PDF][PDF] Comprehensive RNA polymerase II interactomes reveal distinct and varied roles for each phospho-CTD residue

KM Harlen, KL Trotta, EE Smith, MM Mosaheb… - Cell reports, 2016 - cell.com
Transcription controls splicing and other gene regulatory processes, yet mechanisms remain
obscure due to our fragmented knowledge of the molecular connections between the …