Including dissolved oxygen dynamics into the Bt δ-endotoxins production process model and its application to process control

A Amicarelli, F Di Sciascio, JM Toibero… - Brazilian Journal of …, 2010 - SciELO Brasil
This paper proposes a model to characterize the Dissolved Oxygen Dynamics (DO) for the
Bacillus thuringiensis (Bt) δ-endotoxins production process. The objective of this work is to …

Metabolic isotopomer labeling systems. Part II: structural flux identifiability analysis

N Isermann, W Wiechert - Mathematical biosciences, 2003 - Elsevier
Metabolic flux analysis using carbon labeling experiments (CLEs) is an important tool in
metabolic engineering where the intracellular fluxes have to be computed from the …

Metabolic reconstruction and analysis for parasite genomes

JW Pinney, B Papp, C Hyland, L Wambua… - TRENDS in …, 2007 - cell.com
With the completion of sequencing projects for several parasite genomes, efforts are
ongoing to make sense of this mass of information in terms of the gene products encoded …

Investigating the dynamic behavior of biochemical networks using model families

MD Haunschild, B Freisleben, R Takors… - …, 2005 - academic.oup.com
Motivation: Supporting the evolutionary modeling process of dynamic biochemical networks
based on sampled in vivo data requires more than just simulation. In the course of the …

A structured model for the simulation of bioreactors under transient conditions

J Morchain, C Fonade - AIChE journal, 2009 - Wiley Online Library
Modeling the transient behavior of continuous culture is of primary importance for the scale‐
up of biological processes. Spatial heterogeneities increase with the reactor size and micro …

[HTML][HTML] Elucidating dynamics and mechanism of cyclic bioreaction networks using topologically-equivalent electrical circuits

SS Nath, LK Nielsen, J Villadsen - Chemical Engineering Science, 2022 - Elsevier
A novel methodology is established to convert a set of elementary chemical reactions into
topologically-equivalent electrical circuits. The circuit analog is then simulated to elucidate …

Flux balance analysis of a genome‐scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains

T Cakır, Ç Efe, D Dikicioǧlu, A Hortacsu… - Biotechnology …, 2007 - Wiley Online Library
A systems approach to biology requires a principled approach to pathway identification. In
this study, the two nuclear petite yeast mutants K1Δpet191a and K1Δpet191ab and their …

From multi‐scale methodology to systems biology: to integrate strain improvement and fermentation optimization

S Zhang, BC Ye, J Chu, Y Zhuang… - Journal of Chemical …, 2006 - Wiley Online Library
Strain improvement and fermentation optimization are two fundamental tasks in industrial
fermentation. Multi‐scale study on the optimization of industrial fermentation has been …

Intracellular metabolic flux analysis method using substrate labeled with isotope

S Iwatani, Y Usuda, K Matsui - US Patent 8,510,054, 2013 - Google Patents
(57) ABSTRACT A method for intracellular metabolic flux analysis comprising (a) culturing
cells in a medium not containing any isotope labeled substrate to a target phase of the …

Towards systems metabolic engineering of PHA producers

YK Jung, SY Lee, TT Tam - Plastics from Bacteria: Natural Functions and …, 2010 - Springer
Polyhydroxyalkanoates (PHAs) are natural polyesters that accumulate in numerous
microorganisms as a carbon-and energy-storage material under the nutrient-limiting …