Including dissolved oxygen dynamics into the Bt δ-endotoxins production process model and its application to process control
This paper proposes a model to characterize the Dissolved Oxygen Dynamics (DO) for the
Bacillus thuringiensis (Bt) δ-endotoxins production process. The objective of this work is to …
Bacillus thuringiensis (Bt) δ-endotoxins production process. The objective of this work is to …
Metabolic isotopomer labeling systems. Part II: structural flux identifiability analysis
N Isermann, W Wiechert - Mathematical biosciences, 2003 - Elsevier
Metabolic flux analysis using carbon labeling experiments (CLEs) is an important tool in
metabolic engineering where the intracellular fluxes have to be computed from the …
metabolic engineering where the intracellular fluxes have to be computed from the …
Metabolic reconstruction and analysis for parasite genomes
With the completion of sequencing projects for several parasite genomes, efforts are
ongoing to make sense of this mass of information in terms of the gene products encoded …
ongoing to make sense of this mass of information in terms of the gene products encoded …
Investigating the dynamic behavior of biochemical networks using model families
MD Haunschild, B Freisleben, R Takors… - …, 2005 - academic.oup.com
Motivation: Supporting the evolutionary modeling process of dynamic biochemical networks
based on sampled in vivo data requires more than just simulation. In the course of the …
based on sampled in vivo data requires more than just simulation. In the course of the …
A structured model for the simulation of bioreactors under transient conditions
J Morchain, C Fonade - AIChE journal, 2009 - Wiley Online Library
Modeling the transient behavior of continuous culture is of primary importance for the scale‐
up of biological processes. Spatial heterogeneities increase with the reactor size and micro …
up of biological processes. Spatial heterogeneities increase with the reactor size and micro …
[HTML][HTML] Elucidating dynamics and mechanism of cyclic bioreaction networks using topologically-equivalent electrical circuits
SS Nath, LK Nielsen, J Villadsen - Chemical Engineering Science, 2022 - Elsevier
A novel methodology is established to convert a set of elementary chemical reactions into
topologically-equivalent electrical circuits. The circuit analog is then simulated to elucidate …
topologically-equivalent electrical circuits. The circuit analog is then simulated to elucidate …
Flux balance analysis of a genome‐scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains
T Cakır, Ç Efe, D Dikicioǧlu, A Hortacsu… - Biotechnology …, 2007 - Wiley Online Library
A systems approach to biology requires a principled approach to pathway identification. In
this study, the two nuclear petite yeast mutants K1Δpet191a and K1Δpet191ab and their …
this study, the two nuclear petite yeast mutants K1Δpet191a and K1Δpet191ab and their …
From multi‐scale methodology to systems biology: to integrate strain improvement and fermentation optimization
S Zhang, BC Ye, J Chu, Y Zhuang… - Journal of Chemical …, 2006 - Wiley Online Library
Strain improvement and fermentation optimization are two fundamental tasks in industrial
fermentation. Multi‐scale study on the optimization of industrial fermentation has been …
fermentation. Multi‐scale study on the optimization of industrial fermentation has been …
Intracellular metabolic flux analysis method using substrate labeled with isotope
S Iwatani, Y Usuda, K Matsui - US Patent 8,510,054, 2013 - Google Patents
(57) ABSTRACT A method for intracellular metabolic flux analysis comprising (a) culturing
cells in a medium not containing any isotope labeled substrate to a target phase of the …
cells in a medium not containing any isotope labeled substrate to a target phase of the …
Towards systems metabolic engineering of PHA producers
Polyhydroxyalkanoates (PHAs) are natural polyesters that accumulate in numerous
microorganisms as a carbon-and energy-storage material under the nutrient-limiting …
microorganisms as a carbon-and energy-storage material under the nutrient-limiting …