Artificial intelligence in cancer target identification and drug discovery

Y You, X Lai, Y Pan, H Zheng, J Vera, S Liu… - … and Targeted Therapy, 2022 - nature.com
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …

Prostate cancer proteomics: Clinically useful protein biomarkers and future perspectives

P Intasqui, RP Bertolla, MV Sadi - Expert review of proteomics, 2018 - Taylor & Francis
Introduction: Although prostate cancer constitutes one of the most important, death-related
diseases in the male population, there is still a need for identification of sensitive biomarkers …

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

S Banerjee, P Bhandary, M Woodhouse, TZ Sen… - BMC …, 2021 - Springer
Background Gene annotation in eukaryotes is a non-trivial task that requires meticulous
analysis of accumulated transcript data. Challenges include transcriptionally active regions …

Design, synthesis, and anticancer evaluation of novel quinoline derivatives of ursolic acid with hydrazide, oxadiazole, and thiadiazole moieties as potent MEK …

XY Jin, H Chen, DD Li, AL Li, WY Wang… - Journal of enzyme …, 2019 - Taylor & Francis
In this article, a series of novel quinoline derivatives of ursolic acid (UA) bearing hydrazide,
oxadiazole, or thiadiazole moieties were designed, synthesised, and screened for their in …

Structural Studies of Predicted Ligand Binding Sites and Molecular Docking Analysis of Slc2a4 as a Therapeutic Target for the Treatment of Cancer

RT Aruleba, TA Adekiya, BE Oyinloye… - International journal of …, 2018 - mdpi.com
Presently, many studies have focused on exploring in silico approaches in the identification
and development of alternative therapy for the treatment and management of cancer. Solute …

Tubulin βII and βIII isoforms as the regulators of VDAC channel permeability in health and disease

M Puurand, K Tepp, N Timohhina, J Aid, I Shevchuk… - Cells, 2019 - mdpi.com
In recent decades, there have been several models describing the relationships between
the cytoskeleton and the bioenergetic function of the cell. The main player in these models is …

DeeP4med: deep learning for P4 medicine to predict normal and cancer transcriptome in multiple human tissues

R Mahdi-Esferizi, B Haji Molla Hoseyni… - BMC …, 2023 - Springer
Background P4 medicine (predict, prevent, personalize, and participate) is a new approach
to diagnosing and predicting diseases on a patient-by-patient basis. For the prevention and …

Circulating miRNA profiling in plasma samples of ovarian cancer patients

A Penyige, É Márton, B Soltész… - International Journal of …, 2019 - mdpi.com
Ovarian cancer is one of the most common cancer types in women characterized by a high
mortality rate due to lack of early diagnosis. Circulating miRNAs besides being important …

Dissection of paracrine/autocrine interplay in lung tumor microenvironment mimicking cancer cell-monocyte co-culture models reveals proteins that promote …

A Amin, AM Koul, UM Wani, F Farooq, B Amin, Z Wani… - BMC cancer, 2023 - Springer
Background Tumor cell-monocyte interactions play crucial roles in shaping up the pro-
tumorigenic phenotype and functional output of tumor-associated macrophages. Within the …

Topological analysis as a tool for detection of abnormalities in protein–protein interaction data

AW Nowakowska, M Kotulska - Bioinformatics, 2022 - academic.oup.com
Motivation Protein–protein interaction datasets, which can be modeled as networks,
constitute an essential layer in multi-omics approach to biomedical knowledge. This …