Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

S Hoban, JL Kelley, KE Lotterhos… - The American …, 2016 - journals.uchicago.edu
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …

Detecting natural selection in genomic data

JJ Vitti, SR Grossman, PC Sabeti - Annual review of genetics, 2013 - annualreviews.org
The past fifty years have seen the development and application of numerous statistical
methods to identify genomic regions that appear to be shaped by natural selection. These …

YTHDF1 links hypoxia adaptation and non-small cell lung cancer progression

Y Shi, S Fan, M Wu, Z Zuo, X Li, L Jiang, Q Shen… - Nature …, 2019 - nature.com
Hypoxia occurs naturally at high-altitudes and pathologically in hypoxic solid tumors. Here,
we report that genes involved in various human cancers evolved rapidly in Tibetans and six …

Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

X Cai, L Chang, T Zhang, H Chen, L Zhang, R Lin… - Genome biology, 2021 - Springer
Background Despite the prevalence and recurrence of polyploidization in the speciation of
flowering plants, its impacts on crop intraspecific genome diversification are largely …

Genome-wide scan for adaptive divergence and association with population-specific covariates

M Gautier - Genetics, 2015 - academic.oup.com
In population genomics studies, accounting for the neutral covariance structure across
population allele frequencies is critical to improve the robustness of genome-wide scan …

Signature selection analysis reveals candidate genes associated with production traits in Iranian sheep breeds

L Mohamadipoor Saadatabadi… - BMC veterinary …, 2021 - Springer
Background Sheep were among the first animals to be domesticated. They are raised all
over the world and produce a major scale of animal-based protein for human consumption …

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea

F Cheng, R Sun, X Hou, H Zheng, F Zhang, Y Zhang… - Nature …, 2016 - nature.com
Brassica species, including crops such as cabbage, turnip and oilseed, display enormous
phenotypic variation. Brassica genomes have all undergone a whole-genome triplication …

Natural selection and infectious disease in human populations

EK Karlsson, DP Kwiatkowski, PC Sabeti - Nature Reviews Genetics, 2014 - nature.com
The ancient biological'arms race'between microbial pathogens and humans has shaped
genetic variation in modern populations, and this has important implications for the growing …

Fast principal-component analysis reveals convergent evolution of ADH1B in Europe and East Asia

KJ Galinsky, G Bhatia, PR Loh, S Georgiev… - The American Journal of …, 2016 - cell.com
Searching for genetic variants with unusual differentiation between subpopulations is an
established approach for identifying signals of natural selection. However, existing methods …

Genetics in geographically structured populations: defining, estimating and interpreting FST

KE Holsinger, BS Weir - Nature Reviews Genetics, 2009 - nature.com
Wright's F-statistics, and especially F ST, provide important insights into the evolutionary
processes that influence the structure of genetic variation within and among populations …