Plant-microbe interactions in the phyllosphere: facing challenges of the anthropocene

R Perreault, I Laforest-Lapointe - The ISME journal, 2022 - academic.oup.com
Global change is a defining feature of the Anthropocene, the current human-dominated
epoch, and poses imminent threats to ecosystem dynamics and services such as plant …

Abundance-occupancy distributions to prioritize plant core microbiome membership

A Shade, N Stopnisek - Current opinion in microbiology, 2019 - Elsevier
Highlights•Abundance-occupancy distributions can be systematically explored to determine
the core subset and to quantify its contributions to beta diversity.•A standardized approach to …

Multi-kingdom ecological drivers of microbiota assembly in preterm infants

C Rao, KZ Coyte, W Bainter, RS Geha, CR Martin… - Nature, 2021 - nature.com
The gut microbiota of preterm infants develops predictably,,,,,–, with pioneer species
colonizing the gut after birth, followed by an ordered succession of microorganisms. The gut …

Applying the core microbiome to understand host–microbe systems

A Risely - Journal of Animal Ecology, 2020 - Wiley Online Library
The host‐associated core microbiome was originally coined to refer to common groups of
microbes or genes that were likely to be particularly important for host biological function …

Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem

YJ Chen, PM Leung, JL Wood, SK Bay… - The ISME …, 2021 - academic.oup.com
Ecological theory suggests that habitat disturbance differentially influences distributions of
habitat generalist and specialist species. While well-established for macroorganisms, this …

Global distribution of earthworm diversity

HRP Phillips, CA Guerra, MLC Bartz, MJI Briones… - Science, 2019 - science.org
Soil organisms, including earthworms, are a key component of terrestrial ecosystems.
However, little is known about their diversity, their distribution, and the threats affecting them …

Macroecological laws describe variation and diversity in microbial communities

J Grilli - Nature communications, 2020 - nature.com
How the coexistence of many species is maintained is a fundamental and unresolved
question in ecology. Coexistence is a puzzle because we lack a mechanistic understanding …

Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

KL Grady, JW Sorensen, N Stopnisek, J Guittar… - Nature …, 2019 - nature.com
Perennial grasses are promising feedstocks for biofuel production, with potential for
leveraging their native microbiomes to increase their productivity and resilience to …

Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype

N Stopnisek, A Shade - The ISME Journal, 2021 - academic.oup.com
The full potential of managing microbial communities to support plant health is yet-
unrealized, in part because it remains difficult to ascertain which members are most …

Spatial, temporal, and phylogenetic scales of microbial ecology

J Ladau, EA Eloe-Fadrosh - Trends in Microbiology, 2019 - cell.com
Microbial communities play a major role in disease, biogeochemical cycling, agriculture, and
bioremediation. However, identifying the ecological processes that govern microbial …