Into the wild: microbiome transplant studies need broader ecological reality
CJ Greyson-Gaito, TJ Bartley… - … of the Royal …, 2020 - royalsocietypublishing.org
Gut microbial communities (microbiomes) profoundly shape the ecology and evolution of
multicellular life. Interactions between host and microbiome appear to be reciprocal, and …
multicellular life. Interactions between host and microbiome appear to be reciprocal, and …
Deterministic processes drive national‐scale patterns in lake surface sediment bacteria and eukaryotic assemblage composition
JK Pearman, J Adamson… - Limnology and …, 2023 - Wiley Online Library
Biological communities within lake surface sediments play a vital role in biogeochemical
cycling and ecosystem services. Knowledge on abundance‐occupancy patterns and …
cycling and ecosystem services. Knowledge on abundance‐occupancy patterns and …
[HTML][HTML] A metacommunity ecology approach to understanding microbial community assembly in developing plant seeds
GE Bergmann, JHJ Leveau - Frontiers in Microbiology, 2022 - frontiersin.org
Microorganisms have the potential to affect plant seed germination and seedling fitness,
ultimately impacting plant health and community dynamics. Because seed-associated …
ultimately impacting plant health and community dynamics. Because seed-associated …
Community assembly and metaphylogeography of soil biodiversity: Insights from haplotype‐level community DNA metabarcoding within an oceanic island
Most of our understanding of island diversity comes from the study of aboveground systems,
while the patterns and processes of diversification and community assembly for …
while the patterns and processes of diversification and community assembly for …
Decay of similarity across tropical forest communities: integrating spatial distance with soil nutrients
Understanding the mechanisms that drive the change of biotic assemblages over space and
time is the main quest of community ecology. Assessing the relative importance of dispersal …
time is the main quest of community ecology. Assessing the relative importance of dispersal …
Metabarcoding for biodiversity inventory blind spots: A test case using the beetle fauna of an insular cloud forest
Y Arjona, P Arribas, A Salces‐Castellano… - Molecular …, 2023 - Wiley Online Library
Soils harbour a rich arthropod fauna, but many species are still not formally described
(Linnaean shortfall) and the distribution of those already described is poorly understood …
(Linnaean shortfall) and the distribution of those already described is poorly understood …
Selection dictates the distance pattern of similarity in trees and soil fungi across forest ecosystems
YH Hu, DJ Johnson, ZH Sun, LM Gao, HD Wen, K Xu… - Fungal Diversity, 2024 - Springer
How the four major processes affecting community assembly—selection, dispersal, drift, and
diversification—solely or jointly shape co-occurring assemblages of macro-and …
diversification—solely or jointly shape co-occurring assemblages of macro-and …
[HTML][HTML] The stochastic logistic model with correlated carrying capacities reproduces beta-diversity metrics of microbial communities
The large taxonomic variability of microbial community composition is a consequence of the
combination of environmental variability, mediated through ecological interactions, and …
combination of environmental variability, mediated through ecological interactions, and …
All together now: Limitations and recommendations for the simultaneous analysis of all eukaryotic soil sequences
The soil environment contains a large, but historically underexplored, reservoir of
biodiversity. Sequencing prokaryotic marker genes has become commonplace for the …
biodiversity. Sequencing prokaryotic marker genes has become commonplace for the …
[HTML][HTML] Investigating macroecological patterns in coarse-grained microbial communities using the stochastic logistic model of growth
WR Shoemaker, J Grilli - Elife, 2024 - elifesciences.org
The structure and diversity of microbial communities are intrinsically hierarchical due to the
shared evolutionary history of their constituents. This history is typically captured through …
shared evolutionary history of their constituents. This history is typically captured through …