Into the wild: microbiome transplant studies need broader ecological reality

CJ Greyson-Gaito, TJ Bartley… - … of the Royal …, 2020 - royalsocietypublishing.org
Gut microbial communities (microbiomes) profoundly shape the ecology and evolution of
multicellular life. Interactions between host and microbiome appear to be reciprocal, and …

Deterministic processes drive national‐scale patterns in lake surface sediment bacteria and eukaryotic assemblage composition

JK Pearman, J Adamson… - Limnology and …, 2023 - Wiley Online Library
Biological communities within lake surface sediments play a vital role in biogeochemical
cycling and ecosystem services. Knowledge on abundance‐occupancy patterns and …

[HTML][HTML] A metacommunity ecology approach to understanding microbial community assembly in developing plant seeds

GE Bergmann, JHJ Leveau - Frontiers in Microbiology, 2022 - frontiersin.org
Microorganisms have the potential to affect plant seed germination and seedling fitness,
ultimately impacting plant health and community dynamics. Because seed-associated …

Community assembly and metaphylogeography of soil biodiversity: Insights from haplotype‐level community DNA metabarcoding within an oceanic island

C Andújar, P Arribas, H López, Y Arjona… - Molecular …, 2022 - Wiley Online Library
Most of our understanding of island diversity comes from the study of aboveground systems,
while the patterns and processes of diversification and community assembly for …

Decay of similarity across tropical forest communities: integrating spatial distance with soil nutrients

G Peguero, M Ferrín, J Sardans, E Verbruggen… - Ecology, 2022 - Wiley Online Library
Understanding the mechanisms that drive the change of biotic assemblages over space and
time is the main quest of community ecology. Assessing the relative importance of dispersal …

Metabarcoding for biodiversity inventory blind spots: A test case using the beetle fauna of an insular cloud forest

Y Arjona, P Arribas, A Salces‐Castellano… - Molecular …, 2023 - Wiley Online Library
Soils harbour a rich arthropod fauna, but many species are still not formally described
(Linnaean shortfall) and the distribution of those already described is poorly understood …

Selection dictates the distance pattern of similarity in trees and soil fungi across forest ecosystems

YH Hu, DJ Johnson, ZH Sun, LM Gao, HD Wen, K Xu… - Fungal Diversity, 2024 - Springer
How the four major processes affecting community assembly—selection, dispersal, drift, and
diversification—solely or jointly shape co-occurring assemblages of macro-and …

[HTML][HTML] The stochastic logistic model with correlated carrying capacities reproduces beta-diversity metrics of microbial communities

S Zaoli, J Grilli - PLOS Computational Biology, 2022 - journals.plos.org
The large taxonomic variability of microbial community composition is a consequence of the
combination of environmental variability, mediated through ecological interactions, and …

All together now: Limitations and recommendations for the simultaneous analysis of all eukaryotic soil sequences

SD Jurburg, P Keil, BK Singh… - Molecular ecology …, 2021 - Wiley Online Library
The soil environment contains a large, but historically underexplored, reservoir of
biodiversity. Sequencing prokaryotic marker genes has become commonplace for the …

[HTML][HTML] Investigating macroecological patterns in coarse-grained microbial communities using the stochastic logistic model of growth

WR Shoemaker, J Grilli - Elife, 2024 - elifesciences.org
The structure and diversity of microbial communities are intrinsically hierarchical due to the
shared evolutionary history of their constituents. This history is typically captured through …