Defining and quantifying the core microbiome: challenges and prospects

AT Neu, EE Allen, K Roy - Proceedings of the National …, 2021 - National Acad Sciences
The term “core microbiome” has become widely used in microbial ecology over the last
decade. Broadly, the core microbiome refers to any set of microbial taxa, or the genomic and …

[HTML][HTML] The oral microbiota: community composition, influencing factors, pathogenesis, and interventions

X Li, Y Liu, X Yang, C Li, Z Song - Frontiers in microbiology, 2022 - frontiersin.org
The human oral cavity provides a habitat for oral microbial communities. The complexity of
its anatomical structure, its connectivity to the outside, and its moist environment contribute …

The healthy microbiome—what is the definition of a healthy gut microbiome?

F Shanahan, TS Ghosh, PW O'Toole - Gastroenterology, 2021 - Elsevier
Use of microbiome-based biomarkers in diagnosis, prognosis, risk profiling, and precision
therapy requires definition of a healthy microbiome in different populations. To determine …

Toward an integrated understanding of the lepidoptera microbiome

Y Shao, CJ Mason, GW Felton - Annual Review of Entomology, 2024 - annualreviews.org
Research over the past 30 years has led to a widespread acceptance that insects establish
widespread and diverse associations with microorganisms. More recently, microbiome …

[HTML][HTML] Microbiome composition and function in aquatic vertebrates: small organisms making big impacts on aquatic animal health

L Sehnal, E Brammer-Robbins… - Frontiers in …, 2021 - frontiersin.org
Aquatic ecosystems are under increasing stress from global anthropogenic and natural
changes, including climate change, eutrophication, ocean acidification, and pollution. In this …

The evolution and changing ecology of the African hominid oral microbiome

JA Fellows Yates, IM Velsko, F Aron… - Proceedings of the …, 2021 - National Acad Sciences
The oral microbiome plays key roles in human biology, health, and disease, but little is
known about the global diversity, variation, or evolution of this microbial community. To …

[HTML][HTML] A highly conserved core bacterial microbiota with nitrogen-fixation capacity inhabits the xylem sap in maize plants

L Zhang, M Zhang, S Huang, L Li, Q Gao… - Nature …, 2022 - nature.com
Microbiomes are important for crop performance. However, a deeper knowledge of crop-
associated microbial communities is needed to harness beneficial host-microbe interactions …

[HTML][HTML] No evidence for a common blood microbiome based on a population study of 9,770 healthy humans

CCS Tan, KKK Ko, H Chen, J Liu, M Loh… - Nature …, 2023 - nature.com
Human blood is conventionally considered sterile but recent studies suggest the presence of
a blood microbiome in healthy individuals. Here we characterized the DNA signatures of …

[HTML][HTML] Characterization of diazotrophic root endophytes in Chinese silvergrass (Miscanthus sinensis)

Y Li, R Yang, MM Häggblom, M Li, L Guo, B Li… - Microbiome, 2022 - Springer
Background Phytoremediation is a potentially cost-effective way to remediate highly
contaminated mine tailing sites. However, nutrient limitations, especially the deficiency of …

[PDF][PDF] Age and the aging process significantly alter the small bowel microbiome

G Leite, M Pimentel, GM Barlow, C Chang, A Hosseini… - Cell Reports, 2021 - cell.com
Gut microbial diversity decreases with aging, but existing studies have used stool samples,
which do not represent the entire gut. We analyzed the duodenal microbiome in 251 …