Fungi as mediators linking organisms and ecosystems

M Bahram, T Netherway - FEMS Microbiology Reviews, 2022 - academic.oup.com
Fungi form a major and diverse component of most ecosystems on Earth. They are both
micro and macroorganisms with high and varying functional diversity as well as great …

OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes

J Sun, F Lu, Y Luo, L Bie, L Xu, Y Wang - Nucleic acids research, 2023 - academic.oup.com
Advancements in comparative genomics research have led to a growing interest in studying
species evolution and genetic diversity. To facilitate this research, OrthoVenn3 has been …

A genome-scale phylogeny of the kingdom Fungi

Y Li, JL Steenwyk, Y Chang, Y Wang, TY James… - Current Biology, 2021 - cell.com
Phylogenomic studies using genome-scale amounts of data have greatly improved
understanding of the tree of life. Despite the diversity, ecological significance, and …

Sequencing the genomes of the first terrestrial fungal lineages: what have we learned?

AP Gryganskyi, J Golan, A Muszewska, A Idnurm… - Microorganisms, 2023 - mdpi.com
The first genome sequenced of a eukaryotic organism was for Saccharomyces cerevisiae,
as reported in 1996, but it was more than 10 years before any of the zygomycete fungi …

Adaptive advantages of restorative RNA editing in fungi for resolving survival-reproduction trade-offs

Z Qi, P Lu, X Long, X Cao, M Wu, K Xin, T Xue… - Science …, 2024 - science.org
RNA editing in various organisms commonly restores RNA sequences to their ancestral
state, but its adaptive advantages are debated. In fungi, restorative editing corrects …

[HTML][HTML] EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes

DJ Richter, C Berney, JFH Strassert… - Peer Community …, 2022 - peercommunityjournal.org
EukProt is a database of published and publicly available predicted protein sets selected to
represent the breadth of eukaryotic diversity, currently including 993 species from all major …

PaxDb 5.0: curated protein quantification data suggests adaptive proteome changes in yeasts

Q Huang, D Szklarczyk, M Wang, M Simonovic… - Molecular & Cellular …, 2023 - ASBMB
Abstract The" Protein Abundances Across Organisms" database (PaxDb) is an integrative
metaresource dedicated to protein abundance levels, in tissue-specific or whole-organism …

Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota

LJ Galindo, P López-García, G Torruella… - Nature …, 2021 - nature.com
Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living
flagellated stages (zoospores) remain poorly known and their phylogenetic position is often …

Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits

Z Merényi, K Krizsán, N Sahu, XB Liu, B Bálint… - Nature Ecology & …, 2023 - nature.com
Fungi are ecologically important heterotrophs that have radiated into most niches on Earth
and fulfil key ecological services. Despite intense interest in their origins, major genomic …

Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems

L Auer, M Buée, L Fauchery, V Lombard… - New …, 2024 - Wiley Online Library
Soil fungi belonging to different functional guilds, such as saprotrophs, pathogens, and
mycorrhizal symbionts, play key roles in forest ecosystems. To date, no study has compared …