An overview of gene regulation in bacteria by small RNAs derived from mRNA 3′ ends

F Ponath, J Hör, J Vogel - FEMS microbiology reviews, 2022 - academic.oup.com
Over the past two decades, small noncoding RNAs (sRNAs) that regulate mRNAs by short
base pairing have gone from a curiosity to a major class of post-transcriptional regulators in …

Regulation of mRNA stability during bacterial stress responses

DA Vargas-Blanco, SS Shell - Frontiers in microbiology, 2020 - frontiersin.org
Bacteria have a remarkable ability to sense environmental changes, swiftly regulating their
transcriptional and posttranscriptional machinery as a response. Under conditions that …

Bacterial cGAS senses a viral RNA to initiate immunity

DV Banh, CG Roberts, A Morales-Amador, BA Berryhill… - Nature, 2023 - nature.com
Cyclic oligonucleotide-based antiphage signalling systems (CBASS) protect prokaryotes
from viral (phage) attack through the production of cyclic oligonucleotides, which activate …

RNA is a key component of extracellular DNA networks in Pseudomonas aeruginosa biofilms

S Mugunthan, LL Wong, FR Winnerdy… - Nature …, 2023 - nature.com
The extracellular matrix of bacterial biofilms consists of diverse components including
polysaccharides, proteins and DNA. Extracellular RNA (eRNA) can also be present …

Species interactions constrain adaptation and preserve ecological stability in an experimental microbial community

JN Barber, LC Nicholson, LC Woods, LM Judd… - The ISME …, 2022 - academic.oup.com
Species loss within a microbial community can increase resource availability and spur
adaptive evolution. Environmental shifts that cause species loss or fluctuations in community …

A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century

E Bremer, A Calteau, A Danchin… - Microbial …, 2023 - Wiley Online Library
The vast majority of genomic sequences are automatically annotated using various software
programs. The accuracy of these annotations depends heavily on the very few manual …

Gene regulation and transcriptomics

DS Samuels, MC Lybecker, XF Yang, Z Ouyang… - Current issues in …, 2021 - mdpi.com
Borrelia (Borreliella) burgdorferi, along with closely related species, is the etiologic agent of
Lyme disease. The spirochete subsists in an enzootic cycle that encompasses acquisition …

A natural single-guide RNA repurposes Cas9 to autoregulate CRISPR-Cas expression

RE Workman, T Pammi, BTK Nguyen, LW Graeff… - Cell, 2021 - cell.com
CRISPR-Cas systems provide prokaryotes with acquired immunity against viruses and
plasmids, but how these systems are regulated to prevent autoimmunity is poorly …

Gene autoregulation by 3'UTR-derived bacterial small RNAs

M Hoyos, M Huber, KU Förstner, K Papenfort - Elife, 2020 - elifesciences.org
Negative feedback regulation, that is the ability of a gene to repress its own synthesis, is the
most abundant regulatory motif known to biology. Frequently reported for transcriptional …

NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA

ZF Mandell, RT Oshiro, AV Yakhnin, R Vishwakarma… - Elife, 2021 - elifesciences.org
NusA and NusG are transcription factors that stimulate RNA polymerase pausing in Bacillus
subtilis. While NusA was known to function as an intrinsic termination factor in B. subtilis, the …