Regulation of alternative sigma factor use

S Österberg, T Peso-Santos… - Annual review of …, 2011 - annualreviews.org
Alternative bacterial sigma factors bind the catalytic core RNA polymerase to confer
promoter selectivity on the holoenzyme. The different holoenzymes are thus programmed to …

Grading the commercial optical biosensor literature—Class of 2008:'The Mighty Binders'

RL Rich, DG Myszka - Journal of Molecular Recognition: An …, 2010 - Wiley Online Library
Optical biosensor technology continues to be the method of choice for label‐free, real‐time
interaction analysis. But when it comes to improving the quality of the biosensor literature …

The Crc and Hfq proteins of Pseudomonas putida cooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs

R Moreno, S Hernández‐Arranz… - Environmental …, 2015 - Wiley Online Library
The Crc protein is a global regulator that has a key role in catabolite repression and
optimization of metabolism in Pseudomonads. Crc inhibits gene expression post …

The stringent response promotes biofilm dispersal in Pseudomonas putida

C Díaz-Salazar, P Calero, R Espinosa-Portero… - Scientific reports, 2017 - nature.com
Biofilm dispersal is a genetically programmed response enabling bacterial cells to exit the
biofilm in response to particular physiological or environmental conditions. In Pseudomonas …

Signal sensory systems that impact σ54-dependent transcription

V Shingler - FEMS microbiology reviews, 2011 - academic.oup.com
Alternative σ-factors of bacteria bind core RNA polymerase to program the specific promoter
selectivity of the holoenzyme. Signal-responsive changes in the availability of different σ …

Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ54 (RpoN) regulon of Salmonella Typhimurium LT2

DJ Samuels, JG Frye, S Porwollik, M McClelland… - BMC genomics, 2013 - Springer
Abstract Background Sigma54, or RpoN, is an alternative σ factor found widely in
eubacteria. A significant complication in analysis of the global σ 54 regulon in a bacterium is …

Transcriptional activation of the CrcZ and CrcY regulatory RNAs by the CbrB response regulator in Pseudomonas putida

SM García‐Mauriño, I Pérez‐Martínez… - Molecular …, 2013 - Wiley Online Library
The CbrAB two‐component system has been described as a high‐ranked element in the
regulatory hierarchy of P seudomonas putida that controls a variety of metabolic and …

Transcriptional and translational control through the 5′‐leader region of the dmpR master regulatory gene of phenol metabolism

A Madhushani, T del Peso‐Santos… - Environmental …, 2015 - Wiley Online Library
Expression of pathways for dissimilation of toxic aromatic compounds such as (methyl)
phenols interfaces both stress‐response and carbon catabolite repression control cascades …

An effective strategy for a whole-cell biosensor based on putative effector interaction site of the regulatory DmpR protein

S Gupta, M Saxena, N Saini, Mahmooduzzafar… - 2012 - journals.plos.org
Introduction and Rationale The detection of bioavailable phenol is a very important issue in
environmental and human hazard assessment. Despite modest developments recently …

σ54-promoter discrimination and regulation by ppGpp and DksA

LMD Bernardo, LUM Johansson, E Skarfstad… - Journal of biological …, 2009 - ASBMB
The σ 54-factor controls expression of a variety of genes in response to environmental cues.
Much previous work has implicated the nucleotide alarmone ppGpp and its co-factor DksA in …