AI-powered diagnosis of skin cancer: a contemporary review, open challenges and future research directions

N Melarkode, K Srinivasan, SM Qaisar, P Plawiak - Cancers, 2023 - mdpi.com
Simple Summary The proposed research aims to provide a deep insight into the deep
learning and machine learning techniques used for diagnosing skin cancer. While …

Simulation and inference algorithms for stochastic biochemical reaction networks: from basic concepts to state-of-the-art

DJ Warne, RE Baker… - Journal of the Royal …, 2019 - royalsocietypublishing.org
Stochasticity is a key characteristic of intracellular processes such as gene regulation and
chemical signalling. Therefore, characterizing stochastic effects in biochemical systems is …

Practical parameter identifiability for spatio-temporal models of cell invasion

MJ Simpson, RE Baker… - Journal of the …, 2020 - royalsocietypublishing.org
We examine the practical identifiability of parameters in a spatio-temporal reaction–diffusion
model of a scratch assay. Experimental data involve fluorescent cell cycle labels, providing …

Designing and interpreting 4D tumour spheroid experiments

RJ Murphy, AP Browning, G Gunasingh… - Communications …, 2022 - nature.com
Tumour spheroid experiments are routinely used to study cancer progression and treatment.
Various and inconsistent experimental designs are used, leading to challenges in …

Revisiting the Fisher–Kolmogorov–Petrovsky–Piskunov equation to interpret the spreading–extinction dichotomy

M El-Hachem, SW McCue, W Jin… - Proceedings of the …, 2019 - royalsocietypublishing.org
The Fisher–Kolmogorov–Petrovsky–Piskunov model, also known as the Fisher–KPP model,
supports travelling wave solutions that are successfully used to model numerous invasive …

Using experimental data and information criteria to guide model selection for reaction–diffusion problems in mathematical biology

DJ Warne, RE Baker, MJ Simpson - Bulletin of Mathematical Biology, 2019 - Springer
Reaction–diffusion models describing the movement, reproduction and death of individuals
within a population are key mathematical modelling tools with widespread applications in …

Quantitative analysis of tumour spheroid structure

AP Browning, JA Sharp, RJ Murphy, G Gunasingh… - Elife, 2021 - elifesciences.org
Tumour spheroids are common in vitro experimental models of avascular tumour growth.
Compared with traditional two-dimensional culture, tumour spheroids more closely mimic …

[HTML][HTML] Treatment of evolving cancers will require dynamic decision support

MAR Strobl, J Gallaher, M Robertson-Tessi, J West… - Annals of …, 2023 - Elsevier
Highlights•Cancer is a heterogeneous and evolving disease, yet most drugs are
administered to simply give the maximum dose.•Treatment scheduling currently ignores the …

Modeling the extracellular matrix in cell migration and morphogenesis: a guide for the curious biologist

RM Crossley, S Johnson, E Tsingos, Z Bell… - Frontiers in cell and …, 2024 - frontiersin.org
The extracellular matrix (ECM) is a highly complex structure through which biochemical and
mechanical signals are transmitted. In processes of cell migration, the ECM also acts as a …

Model-based data analysis of tissue growth in thin 3D printed scaffolds

AP Browning, OJ Maclaren, PR Buenzli… - Journal of Theoretical …, 2021 - Elsevier
Tissue growth in three-dimensional (3D) printed scaffolds enables exploration and control of
cell behaviour in more biologically realistic geometries than that allowed by traditional 2D …