[HTML][HTML] Systematic identification of smORFs in domestic silkworm (Bombyx mori)
L Wan, W Xiao, Z Huang, A Zhou, Y Jiang, B Zou, B Liu… - PeerJ, 2023 - peerj.com
The silkworm (Bombyx mori) is not only an excellent model species, but also an important
agricultural economic insect. Taking it as the research object, its advantages of low …
agricultural economic insect. Taking it as the research object, its advantages of low …
CPPred-sORF: coding potential prediction of sORF based on non-AUG
X Tong, X Hong, J Xie, S Liu - BioRxiv, 2020 - biorxiv.org
In recent years, researchers have discovered thousands of sORFs that can encode
micropeptides, and more and more discoveries that non-AUG codons can be used as …
micropeptides, and more and more discoveries that non-AUG codons can be used as …
How to overcome constraints imposed by microsporidian genome features to ensure gene prediction?
E Peyretaillade, RF Akossi, J Tournayre… - Journal of Eukaryotic …, 2024 - Wiley Online Library
Since the advent of sequencing techniques and due to their continuous evolution, it has
become easier and less expensive to obtain the complete genome sequence of any …
become easier and less expensive to obtain the complete genome sequence of any …
Rise of bacterial small proteins and peptides in therapeutic applications
R Shelin, S Meenakshi - Protein and Peptide Letters, 2023 - ingentaconnect.com
Background: Polypeptides that comprise less than 100 amino acids (50 amino acids in some
cases) are referred to as small proteins (SPs), however, as of date, there is no strict …
cases) are referred to as small proteins (SPs), however, as of date, there is no strict …
[HTML][HTML] Modelling of pathogen-host systems using deeper ORF annotations and transcriptomics to inform proteomics analyses
The Zika virus is a flavivirus that can cause fulminant outbreaks and lead to Guillain-Barré
syndrome, microcephaly and fetal demise. Like other flaviviruses, the Zika virus is …
syndrome, microcephaly and fetal demise. Like other flaviviruses, the Zika virus is …
Multi-omics annotation of human long non-coding RNAs
LncRNAs (long non-coding RNAs) are pervasively transcribed in the human genome and
also extensively involved in a variety of essential biological processes and human diseases …
also extensively involved in a variety of essential biological processes and human diseases …
A systematic evaluation revealed that detecting translated non-canonical ORFs from ribosome profiling data remains challenging
T Lei, Y Chang, C Yao, H Zhang - bioRxiv, 2022 - biorxiv.org
Non-canonical open reading frames (ORFs), which are ORFs that are not included in
reference genome annotations, are gaining more and more research interest in recent …
reference genome annotations, are gaining more and more research interest in recent …
[HTML][HTML] Translational buffering by ribosome stalling in upstream open reading frames
TA Bottorff, H Park, AP Geballe… - PLoS genetics, 2022 - journals.plos.org
Upstream open reading frames (uORFs) are present in over half of all human mRNAs.
uORFs can potently regulate the translation of downstream open reading frames through …
uORFs can potently regulate the translation of downstream open reading frames through …
Newfound coding potential of transcripts unveils missing members of human protein communities
Recent proteogenomic approaches have led to the discovery that regions of the
transcriptome previously annotated as non-coding regions [ie, untranslated regions (UTRs) …
transcriptome previously annotated as non-coding regions [ie, untranslated regions (UTRs) …
[HTML][HTML] A genomic approach to analyze the cold adaptation of yeasts isolated from Italian Alps
Microorganisms including yeasts are responsible for mineralization of organic matter in cold
regions, and their characterization is critical to elucidate the ecology of such environments …
regions, and their characterization is critical to elucidate the ecology of such environments …