Codon usage analyses reveal the evolutionary patterns among plastid genes of Saxifragales at a larger-sampling scale

D Bi, S Han, J Zhou, M Zhao, S Zhang, X Kan - Genes, 2023 - mdpi.com
Saxifragales is a 15-family order of early-divergent Eudicots with a rich morphological
diversity and an ancient rapid radiation. Codon usage bias (CUB) analyses have emerged …

Comparative chloroplast genomics and insights into the molecular evolution of Tanaecium (Bignonieae, Bignoniaceae)

A Frazão, VA Thode, LG Lohmann - Scientific Reports, 2023 - nature.com
Abstract Species of Tanaecium (Bignonieae, Bignoniaceae) are lianas distributed in the
Neotropics and centered in the Amazon. Members of the genus exhibit exceptionally diverse …

An analysis of codon utilization patterns in the chloroplast genomes of three species of Coffea

Y Li, X Hu, M Xiao, J Huang, Y Lou, F Hu, X Fu, Y Li… - BMC Genomic …, 2023 - Springer
Background The chloroplast genome of plants is known for its small size and low mutation
and recombination rates, making it a valuable tool in plant phylogeny, molecular evolution …

[HTML][HTML] Codon usage bias in the chloroplast genomes of Cymbidium species in Guizhou, China

A Rao, Z Chen, D Wu, Y Wang, N Hou - South African Journal of Botany, 2024 - Elsevier
Cymbidium plants play a vital role in biodiversity conservation, evolutionary research, and
biological protection. Understanding codon usage bias (CUB) in Cymbidium plants is crucial …

Analysis of chloroplast genome structure and phylogeny of the traditional medicinal of Ardisia crispa (Myrsinaceae)

J Ye, Q Luo, Y Lang, N Ding, Y Jian, Z Wu, S Wei… - Scientific Reports, 2024 - nature.com
Ardisia crispa (Myrsinaceae) is an ethnomedicine with horticultural and important medicinal
values. Its morphology is complex, and its identification is difficult. We analyse the …

Complete chloroplast genomes of three wild perennial Hordeum species from Central Asia: genome structure, mutation hotspot, phylogenetic relationships, and …

S Yuan, C Nie, S Jia, T Liu, J Zhao, J Peng… - Frontiers in Plant …, 2023 - frontiersin.org
Hordeum L. is widely distributed in mountain or plateau of subtropical and warm temperate
regions around the world. Three wild perennial Hordeum species, including H. bogdanii, H …

Characterization of the complete chloroplast genome of purple flowering stalk (Brassica campestris var. purpuraria) and comparisons with related species

Y Gong, L Duan, G Zhou, Y Yuan, J Zhang… - Genetic Resources and …, 2024 - Springer
Purple flowering stalk (Brassica campestris var. purpuraria) is an important vegetable and is
widely distributed in the region of the Yangtze River. In the present study, we reported the …

Comparative analysis of codon usage patterns in the chloroplast genomes of nine forage legumes

M Xiao, X Hu, Y Li, Q Liu, S Shen, T Jiang… - … and Molecular Biology …, 2024 - Springer
Leguminosae is one of the three largest families of angiosperms after Compositae and
Orchidaceae. It is widely distributed and grows in a variety of environments, including plains …

Codon usage characterization and phylogenetic analysis of the mitochondrial genome in Hemerocallis citrina

K Zhang, Y Wang, Y Zhang, X Shan - BMC Genomic Data, 2024 - Springer
Abstract Background Hemerocallis citrina Baroni is a traditional vegetable crop widely
cultivated in eastern Asia for its high edible, medicinal, and ornamental value. The …

Comparative analysis of codon usage bias in the chloroplast genomes of eighteen Ampelopsideae species (Vitaceae)

Q Hu, J Wu, C Fan, Y Luo, J Liu, Z Deng, Q Li - BMC Genomic Data, 2024 - Springer
Abstract Background The tribe Ampelopsideae plants are important garden plants with both
medicinal and ornamental values. The study of codon usage bias (CUB) facilitates a deeper …