Monocyte and macrophage dynamics during atherogenesis

K Ley, YI Miller, CC Hedrick - Arteriosclerosis, thrombosis, and …, 2011 - Am Heart Assoc
Vascular inflammation is associated with and in large part driven by changes in the
leukocyte compartment of the vessel wall. Here, we focus on monocyte influx during …

High-throughput methods for combinatorial drug discovery

X Sun, S Vilar, NP Tatonetti - Science translational medicine, 2013 - science.org
A more nuanced approach to drug design is to use multiple drugs in combination to target
interacting or complementary pathways. Drug combination treatments have shown higher …

Heatmapper: web-enabled heat mapping for all

S Babicki, D Arndt, A Marcu, Y Liang… - Nucleic acids …, 2016 - academic.oup.com
Heatmapper is a freely available web server that allows users to interactively visualize their
data in the form of heat maps through an easy-to-use graphical interface. Unlike existing non …

CD47-blocking antibodies restore phagocytosis and prevent atherosclerosis

Y Kojima, JP Volkmer, K McKenna, M Civelek, AJ Lusis… - Nature, 2016 - nature.com
Atherosclerosis is the disease process that underlies heart attack and stroke. Advanced
lesions at risk of rupture are characterized by the pathological accumulation of diseased …

Integration of biological networks and gene expression data using Cytoscape

MS Cline, M Smoot, E Cerami, A Kuchinsky… - Nature protocols, 2007 - nature.com
Cytoscape is a free software package for visualizing, modeling and analyzing molecular and
genetic interaction networks. This protocol explains how to use Cytoscape to analyze the …

Generation of human vascular smooth muscle subtypes provides insight into embryological origin–dependent disease susceptibility

C Cheung, AS Bernardo, MWB Trotter… - Nature …, 2012 - nature.com
Heterogeneity of embryological origins is a hallmark of vascular smooth muscle cells
(SMCs) and may influence the development of vascular disease. Differentiation of human …

The Ubiquitous Distribution of Late Embryogenesis Abundant Proteins across Cell Compartments in Arabidopsis Offers Tailored Protection against Abiotic Stress

A Candat, G Paszkiewicz, M Neveu, R Gautier… - The Plant …, 2014 - academic.oup.com
Late embryogenesis abundant (LEA) proteins are hydrophilic, mostly intrinsically disordered
proteins, which play major roles in desiccation tolerance. In Arabidopsis thaliana, 51 genes …

Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expression

S Kojima, EL Sher-Chen, CB Green - Genes & development, 2012 - genesdev.cshlp.org
Poly (A) tails are 3′ modifications of eukaryotic mRNAs that are important in the control of
translation and mRNA stability. We identified hundreds of mouse liver mRNAs that exhibit …

Cyclin-dependent kinase inhibitor 2B regulates efferocytosis and atherosclerosis

Y Kojima, K Downing, R Kundu, C Miller… - The Journal of …, 2019 - Am Soc Clin Investig
Genetic variation at the chromosome 9p21 risk locus promotes cardiovascular disease;
however, it is unclear how or which proteins encoded at this locus contribute to disease. We …

Novel candidate genes in unstable areas of human atherosclerotic plaques

M Papaspyridonos, A Smith, KG Burnand… - … , and vascular biology, 2006 - Am Heart Assoc
Objective—Comparison of gene expression in stable versus unstable atherosclerotic plaque
may be confounded by interpatient variability. The aim of this study was to identify …