Gene regulatory network inference in the era of single-cell multi-omics
P Badia-i-Mompel, L Wessels, S Müller-Dott… - Nature Reviews …, 2023 - nature.com
The interplay between chromatin, transcription factors and genes generates complex
regulatory circuits that can be represented as gene regulatory networks (GRNs). The study …
regulatory circuits that can be represented as gene regulatory networks (GRNs). The study …
[HTML][HTML] Statistics or biology: the zero-inflation controversy about scRNA-seq data
Researchers view vast zeros in single-cell RNA-seq data differently: some regard zeros as
biological signals representing no or low gene expression, while others regard zeros as …
biological signals representing no or low gene expression, while others regard zeros as …
Transcription factors interact with RNA to regulate genes
O Oksuz, JE Henninger, R Warneford-Thomson… - Molecular cell, 2023 - cell.com
Transcription factors (TFs) orchestrate the gene expression programs that define each cell's
identity. The canonical TF accomplishes this with two domains, one that binds specific DNA …
identity. The canonical TF accomplishes this with two domains, one that binds specific DNA …
[HTML][HTML] Transcription factors associated with abiotic and biotic stress tolerance and their potential for crops improvement
EH Baillo, RN Kimotho, Z Zhang, P Xu - Genes, 2019 - mdpi.com
In field conditions, crops are adversely affected by a wide range of abiotic stresses including
drought, cold, salt, and heat, as well as biotic stresses including pests and pathogens. These …
drought, cold, salt, and heat, as well as biotic stresses including pests and pathogens. These …
EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species
Enhancers are distal cis-regulatory elements that activate the transcription of their target
genes. They regulate a wide range of important biological functions and processes …
genes. They regulate a wide range of important biological functions and processes …
[HTML][HTML] Controlling gene expression with deep generative design of regulatory DNA
Abstract Design of de novo synthetic regulatory DNA is a promising avenue to control gene
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
[HTML][HTML] Intrinsically disordered regions direct transcription factor in vivo binding specificity
Transcription factors (TFs) that bind common DNA motifs in vitro occupy distinct sets of
promoters in vivo, raising the question of how binding specificity is achieved. TFs are …
promoters in vivo, raising the question of how binding specificity is achieved. TFs are …
[HTML][HTML] Plant transcription factors involved in drought and associated stresses
M Hrmova, SS Hussain - International journal of molecular sciences, 2021 - mdpi.com
Transcription factors (TFs) play a significant role in signal transduction networks spanning
the perception of a stress signal and the expression of corresponding stress-responsive …
the perception of a stress signal and the expression of corresponding stress-responsive …
Deep conservation of the enhancer regulatory code in animals
INTRODUCTION In animals, gene regulatory networks specify cell identity in space and
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …
Genetic engineering of microalgae for enhanced lipid production
CF Muñoz, C Südfeld, MIS Naduthodi… - Biotechnology …, 2021 - Elsevier
Microalgae have the potential to become microbial cell factories for lipid production. Their
ability to convert sunlight and CO 2 into valuable lipid compounds has attracted interest from …
ability to convert sunlight and CO 2 into valuable lipid compounds has attracted interest from …