[HTML][HTML] Integrated multi-omics analyses in oncology: a review of machine learning methods and tools

G Nicora, F Vitali, A Dagliati, N Geifman… - Frontiers in …, 2020 - frontiersin.org
In recent years, high-throughput sequencing technologies provide unprecedented
opportunity to depict cancer samples at multiple molecular levels. The integration and …

[HTML][HTML] Methylation and transcriptome analysis reveal lung adenocarcinoma-specific diagnostic biomarkers

R Li, YE Yang, YH Yin, MY Zhang, H Li… - Journal of translational …, 2019 - Springer
Background DNA methylation can regulate the role of long noncoding RNAs (lncRNAs) in
the development of lung adenocarcinoma (LUAD). The present study aimed to identify …

Development and clinical validation of a novel 9-gene prognostic model based on multi-omics in pancreatic adenocarcinoma

D Xu, Y Wang, X Liu, K Zhou, J Wu, J Chen… - Pharmacological …, 2021 - Elsevier
The prognoses of patients with pancreatic adenocarcinoma (PAAD) remain poor due to the
lack of biomarkers for early diagnosis and effective prognosis prediction. RNA sequencing …

[HTML][HTML] Collagen type 1 alpha 1 chain is a novel predictive biomarker of poor progression-free survival and chemoresistance in metastatic lung cancer

L Hou, T Lin, Y Wang, B Liu, M Wang - Journal of Cancer, 2021 - ncbi.nlm.nih.gov
Background: Collagen type 1 alpha 1 chain (COL1A1) is an extracellular matrix protein
comprising two alpha 1 chains and one alpha 2 chain. Our previous study identified that …

[HTML][HTML] Prognostic significance of gene signature of tertiary lymphoid structures in patients with lung adenocarcinoma

H Feng, F Yang, L Qiao, K Zhou, J Wang… - Frontiers in …, 2021 - frontiersin.org
Background Lung adenocarcinoma (LUAD) is a highly mortal cancer. Tertiary lymphoid
structures (TLS) are ectopic lymphoid organs with similar morphological and molecular …

MicroRNA interactome multiomics characterization for cancer research and personalized medicine: an expert review

KJ Sindhu, N Venkatesan… - OMICS: A Journal of …, 2021 - liebertpub.com
MicroRNAs (miRNAs) that are mutually modulated by their interacting partners (interactome)
are being increasingly noted for their significant role in pathogenesis and treatment of …

[HTML][HTML] Multi-omics data analysis identifies prognostic biomarkers across cancers

E Demir Karaman, Z Işık - Medical Sciences, 2023 - mdpi.com
Combining omics data from different layers using integrative methods provides a better
understanding of the biology of a complex disease such as cancer. The discovery of …

[HTML][HTML] A novel prognostic model of early-stage lung adenocarcinoma integrating methylation and immune biomarkers

J Ren, Y Yang, C Li, L Xie, R Hu, X Qin… - Frontiers in …, 2021 - frontiersin.org
Lung adenocarcinoma (LUAD) is caused by multiple biological factors. Therefore, it will be
more meaningful to study the prognosis from the perspective of omics integration. Given the …

[HTML][HTML] PNO1, which is negatively regulated by miR-340-5p, promotes lung adenocarcinoma progression through Notch signaling pathway

D Liu, L Lin, Y Wang, L Chen, Y He, Y Luo, L Qi, Y Guo… - Oncogenesis, 2020 - nature.com
Many studies have shown that the hyperactivation of ribosome biogenesis plays essential
roles in the initiation and progression of cancers. As a ribosome assembly factor, PNO1 …

[HTML][HTML] Multi-omics analysis detects novel prognostic subgroups of breast cancer

QH Nguyen, H Nguyen, T Nguyen, DH Le - Frontiers in genetics, 2020 - frontiersin.org
The unprecedented proliferation of recent large-scale and multi-omics databases of cancers
has given us many new insights into genomic and epigenomic deregulation in cancer …