[HTML][HTML] New avenues in artificial-intelligence-assisted drug discovery
C Cerchia, A Lavecchia - Drug Discovery Today, 2023 - Elsevier
Over the past decade, the amount of biomedical data available has grown at unprecedented
rates. Increased automation technology and larger data volumes have encouraged the use …
rates. Increased automation technology and larger data volumes have encouraged the use …
Protein–ligand docking in the machine-learning era
Molecular docking plays a significant role in early-stage drug discovery, from structure-
based virtual screening (VS) to hit-to-lead optimization, and its capability and predictive …
based virtual screening (VS) to hit-to-lead optimization, and its capability and predictive …
Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer
The past few years have witnessed enormous progress toward applying machine learning
approaches to the development of protein–ligand scoring functions. However, the robust …
approaches to the development of protein–ligand scoring functions. However, the robust …
[HTML][HTML] Artificial intelligence in pharmaceutical sciences
Drug discovery and development affects various aspects of human health and dramatically
impacts the pharmaceutical market. However, investments in a new drug often go …
impacts the pharmaceutical market. However, investments in a new drug often go …
Conserved sites and recognition mechanisms of T1R1 and T2R14 receptors revealed by ensemble docking and molecular descriptors and fingerprints combined with …
Z Cui, N Zhang, T Zhou, X Zhou, H Meng… - Journal of Agricultural …, 2023 - ACS Publications
Taste peptides, as an important component of protein-rich foodstuffs, potentiate the nutrition
and taste of food. Thereinto, umami-and bitter-taste peptides have been ex tensively …
and taste of food. Thereinto, umami-and bitter-taste peptides have been ex tensively …
A generalized protein–ligand scoring framework with balanced scoring, docking, ranking and screening powers
Applying machine learning algorithms to protein–ligand scoring functions has aroused
widespread attention in recent years due to the high predictive accuracy and affordable …
widespread attention in recent years due to the high predictive accuracy and affordable …
Integrated molecular modeling and machine learning for drug design
Modern therapeutic development often involves several stages that are interconnected, and
multiple iterations are usually required to bring a new drug to the market. Computational …
multiple iterations are usually required to bring a new drug to the market. Computational …
Systematic improvement of the performance of machine learning scoring functions by incorporating features of protein-bound water molecules
X Qu, L Dong, J Zhang, Y Si… - Journal of Chemical …, 2022 - ACS Publications
Water molecules at the ligand–protein interfaces play crucial roles in the binding of the
ligands, but the behavior of protein-bound water is largely ignored in many currently used …
ligands, but the behavior of protein-bound water is largely ignored in many currently used …
Open-source machine learning in computational chemistry
A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …
Template‐guided method for protein–ligand complex structure prediction: Application to CASP15 protein–ligand studies
Abstract Critical Assessment of Structure Prediction 15 (CASP15) added a new category of
ligand prediction to promote the development of protein/RNA‐ligand modeling methods …
ligand prediction to promote the development of protein/RNA‐ligand modeling methods …